View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4719_low_3 (Length: 413)
Name: NF4719_low_3
Description: NF4719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4719_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 54791489 - 54791084
Alignment:
| Q |
1 |
actggcatgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791489 |
actggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtca |
54791390 |
T |
|
| Q |
101 |
ttgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54791389 |
ttgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaat |
54791290 |
T |
|
| Q |
201 |
cgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54791289 |
cgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgg |
54791190 |
T |
|
| Q |
301 |
gggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791189 |
gggaggtatttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacct |
54791090 |
T |
|
| Q |
401 |
ttgctt |
406 |
Q |
| |
|
|||||| |
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| T |
54791089 |
ttgctt |
54791084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 54777665 - 54778061
Alignment:
| Q |
9 |
gcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaa |
108 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54777665 |
gcatgtccattgaattccattccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcttgaaaccattccagtcattgttgaa |
54777764 |
T |
|
| Q |
109 |
gtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaag |
208 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
54777765 |
gtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcgttaagg |
54777864 |
T |
|
| Q |
209 |
ttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggta |
308 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54777865 |
ttgctcttaatgttaacgattatacctgtccatggcca-acataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgggggaggta |
54777963 |
T |
|
| Q |
309 |
tttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
406 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777964 |
tttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
54778061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 52284147 - 52283742
Alignment:
| Q |
1 |
actggcatgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284147 |
actggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtca |
52284048 |
T |
|
| Q |
101 |
ttgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
52284047 |
ttgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagaat |
52283948 |
T |
|
| Q |
201 |
cgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgg |
300 |
Q |
| |
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| || | ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
52283947 |
cattcagtttgctcttaatattaacaattatgcctgtccatggccagacatagttctcaacctgtggtgcaggttggttgacagcttcggtcaaaggcgg |
52283848 |
T |
|
| Q |
301 |
gggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacct |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52283847 |
gggaggtatttggtctgcttcatttgctaggtcagtctccaaaaactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacct |
52283748 |
T |
|
| Q |
401 |
ttgctt |
406 |
Q |
| |
|
|||||| |
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|
| T |
52283747 |
ttgctt |
52283742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 799398 - 799020
Alignment:
| Q |
20 |
gaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacag |
119 |
Q |
| |
|
|||||||| ||||| || ||| || ||||||| |||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||| |
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| T |
799398 |
gaattccaatccttttttccacgacgtttagtctcaaagcatttctcaagctcacttgcattcataaacccattccagtcattgttgaagtctataacag |
799299 |
T |
|
| Q |
120 |
cctgattgtcaccatccatgaagaatacatggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaat |
219 |
Q |
| |
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|| || ||||||||| ||||| ||| ||| |||| ||| ||||||| |||||||||||| || ||||||||| ||| | | ||||| || |
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| T |
799298 |
ccacggagttaccatccatcaagaacgtatgaacagccaacggtttgtacttagcaaattccttttgcaagtatccagaatcatgtgatttgctt---at |
799202 |
T |
|
| Q |
220 |
gttaacgattatgcctgtccatggccagacataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgct |
319 |
Q |
| |
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||| || | |||||||||||| ||||| || || |||||||| || |||||||| |||||| | | |||||||||| |||||| |||||||||| |
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| T |
799201 |
gttgacaagtatgcctgtccacggccaaacgtagttctcaacttgga---caggttggacaacagctacagtcaaagccgggcgaggtacttggtctgct |
799105 |
T |
|
| Q |
320 |
tcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgc |
404 |
Q |
| |
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|||||| ||| ||||||| |||| ||||||||||||| ||||||||||| ||||| || | | |||||||||| |||||||||| |
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| T |
799104 |
tcatttgctaagtcagtcctcaaaaactttgccagagccaggtggtttgctttttgctttgtgcttctgtttgccgaacctttgc |
799020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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