View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4720-Insertion-1 (Length: 636)
Name: NF4720-Insertion-1
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 7 - 636
Target Start/End: Complemental strand, 45142197 - 45141568
Alignment:
| Q |
7 |
aggatatttatcacattccaaattggaccgcttattttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45142197 |
aggatatttatcacattccaaattggaccacttattttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtg |
45142098 |
T |
|
| Q |
107 |
tccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142097 |
tccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttc |
45141998 |
T |
|
| Q |
207 |
atattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaag |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45141997 |
atattagcttcaactttactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaag |
45141898 |
T |
|
| Q |
307 |
ctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacact |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45141897 |
ctccaagctcaccacacgttgaacgtacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacact |
45141798 |
T |
|
| Q |
407 |
ggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141797 |
ggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtg |
45141698 |
T |
|
| Q |
507 |
ttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttcca |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141697 |
ttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttcca |
45141598 |
T |
|
| Q |
607 |
atgcgaaagctactgtttcttcaacttgtt |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45141597 |
atgcgaaagctactgtttcttcaacttgtt |
45141568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 75 - 636
Target Start/End: Complemental strand, 45152774 - 45152211
Alignment:
| Q |
75 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
174 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
175 |
gtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
45152674 |
gtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccaga |
45152575 |
T |
|
| Q |
275 |
cggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatgg |
374 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || ||||| |||| |||||||||||||| | ||||||||| |
|
|
| T |
45152574 |
aggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtttggatgttgtataatcatgt |
45152475 |
T |
|
| Q |
375 |
ccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctg |
474 |
Q |
| |
|
|| | | ||||||||| || |||| ||||| || || ||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||| || |
|
|
| T |
45152474 |
cctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttg |
45152375 |
T |
|
| Q |
475 |
cgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagaca------taccaccttcaattccagc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||||| || ||||| |||||||||| |
|
|
| T |
45152374 |
tagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatca----ttagtatgctgatagacatagcagtagcacctccaattccagc |
45152279 |
T |
|
| Q |
569 |
gttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtt |
636 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
45152278 |
attgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaacttgtt |
45152211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 69 - 541
Target Start/End: Complemental strand, 38256599 - 38256127
Alignment:
| Q |
69 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
168 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
|
|
| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
169 |
cctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaac |
268 |
Q |
| |
|
|||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |||| | ||||||||||||||||||||| || ||||| |
|
|
| T |
38256499 |
ccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaac |
38256400 |
T |
|
| Q |
269 |
accattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataa |
368 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |||| ||||||||||| || | |||| |
|
|
| T |
38256399 |
agcatagggtgagattgaattgactctgattccataagctccaagctcaccgcatgctgacctaacaaggcctataagaccatgttttgatgctgtataa |
38256300 |
T |
|
| Q |
369 |
tcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttga |
468 |
Q |
| |
|
||||| || | | | | ||||| | ||||||||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| ||||||| |
|
|
| T |
38256299 |
tcatgtcctgcacatctaccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttga |
38256200 |
T |
|
| Q |
469 |
tagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
541 |
Q |
| |
|
||| ||| || ||||||| || | ||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
38256199 |
tagttgcagctgcaccacgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtatgct |
38256127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
75 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
172 |
Q |
| |
|
|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University