View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4720-Insertion-10 (Length: 399)

Name: NF4720-Insertion-10
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4720-Insertion-10
NF4720-Insertion-10
[»] chr1 (1 HSPs)
chr1 (6-399)||(30024135-30024545)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 399
Target Start/End: Complemental strand, 30024545 - 30024135
Alignment:
Q  6 caacatgaataaacacagactattgttaagacttgtagtgaactagtgatgatatttatagattaagctatcaatttttcttgctcttgaatttacccaa 105  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30024545 caacatgaataaacgcagactattgttaagacttgtagtgaactagtggtgatatttatagattaagctatcaattttgcttgctcttgaatttacccaa 30024446  T
Q  106 gtgcaatatacaatccactaatggtgaacataacaggaatga-----------------agcattacacatatgagttgctcttgcgctgcatagctctt 188  Q
    |||||||||||||||||||||| |||||||||||||||||||                 ||||||||||||||||||||||||||| |||||||||||||    
T  30024445 gtgcaatatacaatccactaattgtgaacataacaggaatgatgcaaactcttagataaagcattacacatatgagttgctcttgccctgcatagctctt 30024346  T
Q  189 aacaattggatttttattccttcttgagtgatcgatcacgaggtagaaacctactatgcgagtcaaaccatgataccttcccaccgaattttaatttaga 288  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30024345 aacaattggatttttattccttcttgagtgatcgatcatgaggtagaaacctactatgcgagtcaaaccatgataccttcccaccgaattttaatttaaa 30024246  T
Q  289 tgtttttgtgtcttcaatgcaagtaggacatgccaatttaccatgagtcccccatcataacaacatctcataagcagggaaatcattaatgatccacatc 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  30024245 tgtttttgtgtcttcaatgcaagtaggacatgccaatttaccatgagtcccccatcataacaacatttcataagcagggaaatcattaatggtccacatc 30024146  T
Q  389 aaagccgtttt 399  Q
    |||||||||||    
T  30024145 aaagccgtttt 30024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University