View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720-Insertion-11 (Length: 330)
Name: NF4720-Insertion-11
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 49190972 - 49191223
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcacca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49190972 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcacca |
49191071 |
T |
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| Q |
108 |
aaaaagtgatccggtatagttacattatagtcaactaattgaaaaggccaagttaatcgatatgcacaatcgttcatatatataatttatttattaggtc |
207 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49191072 |
aaaaagtgatccagtatagttacattatagtcaactaattgaaaaggccaagttaatcgatatgcacaatcgttcatatatataatttatttactaggtc |
49191171 |
T |
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| Q |
208 |
taataggtattaactattaatttcggcagaatcagttaagatttttccactt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49191172 |
taataggtattaactattaatttcggcagaatcagttaagatttttccactt |
49191223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 49187281 - 49187415
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcacca |
107 |
Q |
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|||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
49187281 |
ctgccttcttctcatacagaattgcttcagtctctttctgtttcttgtacagctcccagtttgcttcttgtacctacaccatccaaagttttaatcacca |
49187380 |
T |
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| Q |
108 |
aaaaagtgatccggtatagttacattatagtcaac |
142 |
Q |
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| T |
49187381 |
aaaaagtaatacagtatagttatataatagccaac |
49187415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 49202261 - 49202370
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcacca |
107 |
Q |
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|||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
49202261 |
ctgccttcttctcatacagaattgcttcagcctctttctgcttcttgtacagctcccagtttgcttcttgtacctacaccatccagagtttgaatcaccg |
49202360 |
T |
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| Q |
108 |
aaaaagtgat |
117 |
Q |
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|||||||||| |
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| T |
49202361 |
aaaaagtgat |
49202370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 49211790 - 49211883
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaa |
101 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||| | ||||||||||||||| |
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| T |
49211790 |
ctgccttcttctcaaacagaattgcttctgcctccttttgtttcttgtataattcccagttagcctcttgtacctacagcatccagaatttcaa |
49211883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 49207216 - 49207312
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatca |
104 |
Q |
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|
|||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||| || ||||||||||| | |||||||||||||||||| |
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| T |
49207216 |
ctgccttcttctcatacagaattgcttcagcctctttttgtttcttgtataattcccagttagcctcttgtacctagagcatccagaatttcaatca |
49207312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 49191245 - 49191273
Alignment:
| Q |
302 |
tgggagacaatcaaaagccaactgtgatc |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49191245 |
tgggagacaatcaaaagccaactgtgatc |
49191273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 26756263 - 26756367
Alignment:
| Q |
12 |
cttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcaccaaaaa |
111 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| || ||||||||||| ||||||||||| |
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| T |
26756263 |
cttcttctcatacagaattgcttctgcctctttttgtttcttgtacagctcccagtttgcctcttgtgcctgcactatccagaatttgaatcaccaaaat |
26756362 |
T |
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| Q |
112 |
agtga |
116 |
Q |
| |
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||||| |
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| T |
26756363 |
agtga |
26756367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 37030427 - 37030530
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaatcacca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||| | ||| |||||||| |
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| T |
37030427 |
ctgccttcttctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcacctacaccatccaaagttttaatcacca |
37030526 |
T |
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| Q |
108 |
aaaa |
111 |
Q |
| |
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|||| |
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| T |
37030527 |
aaaa |
37030530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 32593313 - 32593220
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| | |||||||| || ||||||||||| |||||||| |||||||| |
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| T |
32593313 |
ctgccttcttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacctaaaccatccaaaatttcaa |
32593220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 51823978 - 51824071
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtacctataccatccagaatttcaa |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||| | |||||||| || |||||||| || ||||| ||||||||||| |
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| T |
51823978 |
ctgccttcttctcgtacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacataaaccattcagaatttcaa |
51824071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 31527088 - 31527163
Alignment:
| Q |
8 |
ctgccttcttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtaccta |
83 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||| |||| | |||||||| || ||||||||||| |
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| T |
31527088 |
ctgccttcttctcatacagaattgcttctgcttctttttgtttcctgtataattcccagttagcctcttgtaccta |
31527163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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