View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720-Insertion-12 (Length: 311)
Name: NF4720-Insertion-12
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-12 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 31191901 - 31191598
Alignment:
| Q |
8 |
ctacgcaatatatattttttctaggacaatcactcgccaaatgtttttctgactcggttcatccaaagagtaagaattgttgataactgtagcagtggag |
107 |
Q |
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| T |
31191901 |
ctacgcaatatatattttttctaggacaatccctcgccaaaaatttttctgactgagctcgtcgaaagagtaagaattgttgataactgtagcagtggag |
31191802 |
T |
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| Q |
108 |
ggcttgaattggatatagaagtctttaaaaggtttgacgccaatgattacgggttgtctcaaggttacctcgtggtggattatgaatttgtggattgtgg |
207 |
Q |
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| T |
31191801 |
ggcttgaattggatatagatgtctttaaaaggtttgacaccagtggttacgggatgtctcaaggttacctcgtggtggattatgaatttgtggattgtgg |
31191702 |
T |
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| Q |
208 |
tactactaatcatctcttttaccctattataagttgattatattctagttttaatttctataaaagaaatcatcaacatagtttatggttatatgatgtt |
307 |
Q |
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| T |
31191701 |
tactactaattatctcttttaccctattataagttgattatattctagttttaatttctataaaagaaatcatcaacatagtttatggttatatgatgtt |
31191602 |
T |
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| Q |
308 |
ttga |
311 |
Q |
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|||| |
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| T |
31191601 |
ttga |
31191598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 70 - 311
Target Start/End: Complemental strand, 31205705 - 31205464
Alignment:
| Q |
70 |
ccaaagagtaagaattgttgataactgtagcagtggagggcttgaattggatatagaagtctttaaaaggtttgacgccaatgattacgggttgtctcaa |
169 |
Q |
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| T |
31205705 |
ccaaacagtaagaattgttgataactgtagtcatggagggcttgaattggatatggatgtctttcaaaagcttgacaccagtggttacgggatgtctcaa |
31205606 |
T |
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| Q |
170 |
ggttacctcgtggtggattatgaatttgtggattgtggtactactaatcatctcttttaccctattataagttgattatattctagttttaatttctata |
269 |
Q |
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| T |
31205605 |
ggttacctcgtggtggattacgaatttgtgaactgtggtactactaattatctcttttaccctattataagttgattatattctagttttaatttctata |
31205506 |
T |
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| Q |
270 |
aaagaaatcatcaacatagtttatggttatatgatgttttga |
311 |
Q |
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| T |
31205505 |
aaagaaatcatcaacatagtttatggttatatgatgttttga |
31205464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 31174369 - 31174296
Alignment:
| Q |
165 |
ctcaaggttacctcgtggtggattatgaatttgtggattgtggtactactaatcatctcttttaccctattata |
238 |
Q |
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| T |
31174369 |
ctcaaggttaccttttggtggattatgaatttgtggactgtggtactactacttatctcttttaccttattata |
31174296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 31142373 - 31142330
Alignment:
| Q |
165 |
ctcaaggttacctcgtggtggattatgaatttgtggattgtggt |
208 |
Q |
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| T |
31142373 |
ctcaaggttaccttatggtggattatgaatttgtggattgtggt |
31142330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 31174464 - 31174401
Alignment:
| Q |
70 |
ccaaagagtaagaattgttgataactgtagcagtggagggcttgaattggatatagaagtcttt |
133 |
Q |
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| T |
31174464 |
ccaaacagtaagaattgtagatgagtgtagcaatggagggcttgacttggatatggatgtcttt |
31174401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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