View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720-Insertion-2 (Length: 555)
Name: NF4720-Insertion-2
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 52262343 - 52262889
Alignment:
| Q |
8 |
attctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagca |
107 |
Q |
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| T |
52262343 |
attctcagccaccatttcatcatcaaacaattcaaaattccatccag-atccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagca |
52262441 |
T |
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| Q |
108 |
cctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaatcctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262442 |
cctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaatcctct |
52262541 |
T |
|
| Q |
208 |
gaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataaggaaccaaaatttcatccattaaagggtacccagaatt |
307 |
Q |
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| T |
52262542 |
gaatatcctcaaccttctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataaggaaccaaaatttcatccattaaagggtacccagaatt |
52262641 |
T |
|
| Q |
308 |
tccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccgatttctcgaaaacctgttcatcagaataagaaccaggccaacca |
407 |
Q |
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| T |
52262642 |
tccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccgatttctcgaaaacctattcatcagaataagaaccaggccaacca |
52262741 |
T |
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| Q |
408 |
atacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaat |
507 |
Q |
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| T |
52262742 |
atacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaat |
52262841 |
T |
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| Q |
508 |
aataagaattcgcattggagtttggtgcaattatgggaatatgagtag |
555 |
Q |
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| T |
52262842 |
aataagaattcacattggagttaggtgcaattatgggaatatgagtag |
52262889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 52250700 - 52251239
Alignment:
| Q |
8 |
attctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagca |
107 |
Q |
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| T |
52250700 |
attctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagca |
52250799 |
T |
|
| Q |
108 |
cctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaatcctct |
207 |
Q |
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|| | || |||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||| ||||| ||| | | ||| |
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| T |
52250800 |
ccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgcatccttactcagcttct |
52250899 |
T |
|
| Q |
208 |
gaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataaggaaccaaaatttcatccattaaagggtacccagaatt |
307 |
Q |
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| T |
52250900 |
gaatatcttccactttctcattaaacgcgtgctgtgtccaagtaagattctgatgtgtataaggaaccaaaattccatccatcaaagggaacccagaatt |
52250999 |
T |
|
| Q |
308 |
tccagcaacccaagcatctttcaaatctccct-tcacaattctcttaaacaaatccgatttctcgaaaacctgttcatcagaataagaaccaggccaacc |
406 |
Q |
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|||| ||||||||| ||||||||||| ||||| ||| | ||||| | ||| | |||||||| ||||| || |||||| |||||||||||| |||| |
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| T |
52251000 |
tccaacaacccaagaatctttcaaat-tccctgtcatagctctctgatacattacagatttctccaaaacttgatcatcattataagaaccagggtaacc |
52251098 |
T |
|
| Q |
407 |
aatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaa |
506 |
Q |
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|| | | || | |||||||| |||||||| ||||||||||| |||||||||| |||||| | | |||||| |||||||||||| || || ||||||| |
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| T |
52251099 |
aagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattga-- |
52251196 |
T |
|
| Q |
507 |
taataagaattcgcattggagtttggtgcaattatgggaatatg |
550 |
Q |
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| T |
52251197 |
-aataagaattcacattgttcttaggtgcaattattggaatatg |
52251239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 3698992 - 3698843
Alignment:
| Q |
52 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctctt |
151 |
Q |
| |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | | ||||||||| | | ||||| || ||||| || |
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| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
3698893 |
T |
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| Q |
152 |
ctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
201 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
3698892 |
ctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3698843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 3702680 - 3702531
Alignment:
| Q |
52 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctct |
150 |
Q |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| | || || ||||||||| | || ||||| || ||||| | |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttt |
3702582 |
T |
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| Q |
151 |
tctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
201 |
Q |
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| T |
3702581 |
tctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3702531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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