View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720-Insertion-5 (Length: 70)
Name: NF4720-Insertion-5
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-28
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 23538055 - 23537993
Alignment:
| Q |
8 |
ttcactaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23538055 |
ttcactaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
23537993 |
T |
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Target: chr7 (Bit Score: 59; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 10645943 - 10645881
Alignment:
| Q |
8 |
ttcactaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
70 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10645943 |
ttcactaattaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
10645881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 43469437 - 43469375
Alignment:
| Q |
8 |
ttcactaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43469437 |
ttcactaatcaggtttttcatctcctcaagagactaattaatactcacaccaacctattttca |
43469375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 46566813 - 46566871
Alignment:
| Q |
12 |
ctaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46566813 |
ctaatcaggtttttcatctcctcaagagactaattaatactcacaccagcctattttca |
46566871 |
T |
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