View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4720-Insertion-6 (Length: 545)
Name: NF4720-Insertion-6
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-6 |
 | |
|
| [»] chr7 (11 HSPs) |
| |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Original strand, 25635890 - 25636427
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25635890 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgataataatgtaaataacttaaactaaagatagatttggagt |
25635989 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatg |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
25635990 |
tctaaactagacaaggagataacattatgtaatttatgattaaatatgtactaaagatatgattttcatctatttcaattgaaaaaatacccggattatg |
25636089 |
T |
|
| Q |
207 |
tgtttattgtcatgaacgacattttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25636090 |
tgtttattgtcatgaacgacattttttacggccgtaacggtgtttcgttgcggctattatggcttttggtcgtgatttttgttcactatgtagaaacggt |
25636189 |
T |
|
| Q |
307 |
gaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcggaccgttttttaaaaccttttagtatataaatgtctaattatcttcac |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25636190 |
gaaaaacagtagcatcatctacctatacctttttgtcgcggcctttttctcggaccgttttttaaaaccttttagtatataaatgtctaattatcttcac |
25636289 |
T |
|
| Q |
407 |
taatatttaaaatttgtgcattttatctcttttattcacttcaaaattatagcaatgaacaacttcattcgttgtgagaaatagagacggatccttaacc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25636290 |
taatatttaaaatttgtgcattttatctcttttattcacttcaaaattatagcaatgaacaacttcattcgttgtgagaaatagagacggatccttaacc |
25636389 |
T |
|
| Q |
507 |
tttgtaaagggccccattggactcaagctatcacttttt |
545 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
25636390 |
tttgtaaagggccccattggactc-atctatcacttttt |
25636427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 47363694 - 47363938
Alignment:
| Q |
11 |
attgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttcta |
110 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
47363694 |
attgcggttgtcttggtgtgaattaatcaaaacattgcacaagtcttaaataatgataataacttaaataacttaaactagagaaagatttgaagttcta |
47363793 |
T |
|
| Q |
111 |
aactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatct-atctcaatcgaaaaaatacccggattatgtgt |
209 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| |||||||||||||| |||| ||||||||| |||||||| ||||||||| ||||||| | ||| |
|
|
| T |
47363794 |
aactagataaggagataac-ttatgtaatctatgatcaaatatgtactaaaaatatgcttttcatctaatctcaattgaaaaaatatccggattctatgt |
47363892 |
T |
|
| Q |
210 |
ttattgtcatgaacgac-attttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
|||||||||||||| | ||||||| ||| |||| ||||||||||| |
|
|
| T |
47363893 |
ctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgt |
47363938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 39653445 - 39653626
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttc |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||| || || ||||||||||||||||| | ||| | ||||||||| |
|
|
| T |
39653445 |
ggattgtggttgttgcggtgtgaattaatcacaatattccacaactcttaaataatgatagcaacgtaaataacttaaactagatataaagttggagttc |
39653544 |
T |
|
| Q |
109 |
taaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaa |
190 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||| ||||| |||| |
|
|
| T |
39653545 |
taaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaatatgatgttcatctatttcaattgaaa |
39653626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 83 - 314
Target Start/End: Original strand, 10493472 - 10493702
Alignment:
| Q |
83 |
ttaaactaaagatagatttggagttctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctc |
182 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||| | |||| |||| | ||||||| ||||| |
|
|
| T |
10493472 |
ttaaactagagatggatttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatga-tttcatccatctc |
10493570 |
T |
|
| Q |
183 |
aatcgaaaaaatacccggattatgtgtttattgtcatgaacgacattttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgat |
282 |
Q |
| |
|
||| ||||||||| | ||||||||| |||||| ||||| | |||||| | ||||| ||||||||||| || | |||| ||| | | ||| |||||||| |
|
|
| T |
10493571 |
aattgaaaaaatatacatattatgtgtctattgttatgaatggcattttatgcggccttaacggtgttttgtcgcggctgttaggacgttttgtcgtgat |
10493670 |
T |
|
| Q |
283 |
ttttgttcactatgtagaaacggtgaaaaaca |
314 |
Q |
| |
|
||||| ||||| ||| |||| |||||||||| |
|
|
| T |
10493671 |
ttttggtcactccgtacaaacagtgaaaaaca |
10493702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 33049291 - 33049076
Alignment:
| Q |
25 |
ggtgtgaattaatcacaacattgcacacctcttaaataatgt-taataatgtaaataacttaaactaaagatagatttggagttctaaactaga------ |
117 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
33049291 |
ggtgtgaattaatcaaaacattgcacaactcttaaataatgtataataacttaaataacttgaaatagagatagatttgaagtt-taaactagataaaga |
33049193 |
T |
|
| Q |
118 |
----ctaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttat |
213 |
Q |
| |
|
|||||||||| || ||||||||||| | |||||||||||||| || | ||||||||| |||||||| | ||||||| ||||| | ||| ||| |
|
|
| T |
33049192 |
gcataaaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattg-aaaaataatgggattctctgtctat |
33049094 |
T |
|
| Q |
214 |
tgtcatgaacgacatttt |
231 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
33049093 |
tgtcatgaacaacatttt |
33049076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 10493372 - 10493439
Alignment:
| Q |
23 |
gcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaacta |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
10493372 |
gcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacgtaaataacttaaacta |
10493439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 31743053 - 31742971
Alignment:
| Q |
26 |
gtgtgaattaatcacaacattgcacacctcttaaataatgt-taataatgtaaataacttaaactaaagatagatttggagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
31743053 |
gtgtgaattaatcacaacattgcacagttcttaaataatgtataataacttaaataacttaaattagagatagatttgaagtt |
31742971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 7493067 - 7493138
Alignment:
| Q |
24 |
cggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagat |
95 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| || ||| |||||||| |||||||| |||| |
|
|
| T |
7493067 |
cggtgtgaattaatcacaacattacacaactcttaaataatgatagtaacgtaaataatttaaactagagat |
7493138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 45435484 - 45435421
Alignment:
| Q |
98 |
atttggagttctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaa |
161 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45435484 |
atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaa |
45435421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 35451053 - 35451093
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattg |
47 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35451053 |
acggattgccattgttgcggtgtgaattaatcacaacattg |
35451093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 45435591 - 45435550
Alignment:
| Q |
23 |
gcggtgtgaattaatcacaacattgcacacctcttaaataat |
64 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
45435591 |
gcggtgtgaattaataacaatattgcacaactcttaaataat |
45435550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 28147159 - 28146812
Alignment:
| Q |
13 |
tgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaa |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
28147159 |
tgcggttgtcgcggtgtgaattaatcacaacattgcacaactcttaaataatattatcaacttaaataacttaaactagggaaagatttggaattctaaa |
28147060 |
T |
|
| Q |
113 |
ctagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgttta |
212 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||| || |||| | ||| || |
|
|
| T |
28147059 |
ttagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaatatccagattctatgtcta |
28146961 |
T |
|
| Q |
213 |
ttgtcatgaacgac----attttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtga |
308 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||| | ||| | | | | ||| ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
28146960 |
ttgtcatgaacggccttttttttttgcggccgtaacggtgtttcgtcgcagctgtaacgacgttttgtcgtgatttttgttcactctgtaaaaacggtga |
28146861 |
T |
|
| Q |
309 |
aaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctc |
357 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
28146860 |
aaaacggtaatgtccgctacctatacctttttgttgcggcctttttctc |
28146812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 38411858 - 38412204
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttct |
109 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| || ||||| |||| || |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
38411858 |
gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaacaatgataggaatgtaaataacttaacctagagatagatttggagttct |
38411957 |
T |
|
| Q |
110 |
aaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgt |
209 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| || || |||||| |||| |||| |||||||||||||| ||| ||||| ||| | |||| |||| |
|
|
| T |
38411958 |
aaactagataaggaaataacattatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagatattcagatttggtgt |
38412057 |
T |
|
| Q |
210 |
ttattgtcatgaacgacatt-ttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtga |
308 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||||| | |||| | | || ||| ||| ||||||||||||||| ||| ||||||| |
|
|
| T |
38412058 |
ctattgtcatgaacgacattcttttgcggccgtaatggtgtttcgtcgcggctgtaacagcgtttcgtcttgatttttgttcactctgtgaaaacggt-- |
38412155 |
T |
|
| Q |
309 |
aaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
|| | ||| |||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
38412156 |
-aaccggtaacgtcggctacctata-ctttttgtcgccgcctttttctcgg |
38412204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 55606236 - 55606575
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttct |
109 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||| ||| |||||||||||||| |
|
|
| T |
55606236 |
gattacggttgtcgcattgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttggagttct |
55606335 |
T |
|
| Q |
110 |
aaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgt |
209 |
Q |
| |
|
|||||| | |||| ||||| |||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| ||||||||| ||||| ||| |
|
|
| T |
55606336 |
aaactatataaggaaataac-ttatgtaatttatgatcaaatatgtactaaaaatataattttcatctatatcaattgaaaaaatatttggattccatgt |
55606434 |
T |
|
| Q |
210 |
ttattgtcatgaac-gacattttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtga |
308 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||| | | |||| | | || ||| ||||||||||||||||||| | |||| |
|
|
| T |
55606435 |
ctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgcggctgtaacggtgtttcgtcgtgatttttgttcact---------cagtga |
55606525 |
T |
|
| Q |
309 |
aaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
55606526 |
aaaacggtaacgtccactacctatacctttttgtcg-ggcctttttctcgg |
55606575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 25968182 - 25967824
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || | | || ||||||||||||| ||| |||| || || |
|
|
| T |
25968182 |
acggattgcggttgtcgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtcacttacataacttaaactagagaaagatctgacgt |
25968083 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcg--aaaaaatacccggatta |
204 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| || |||||||||| ||| |||| ||| |||||||| ||||| | |||||||| ||| ||| |
|
|
| T |
25968082 |
tctaaactagataagaagataac-ttatgtaatttattatcaaatatgtaccaaaaatatgattatcatctatatcaattgaaaaaaaatatccgaattc |
25967984 |
T |
|
| Q |
205 |
tgtgtttattgtcatgaacgac-attttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcac----tatgtag |
299 |
Q |
| |
|
| ||| | |||||||||| | | ||||||| | |||||||||||||||||| | || | | | ||| ||| |||||||||||||||||| |||||| |
|
|
| T |
25967983 |
tatgtctgttgtcatgaatggcaattttttgcagccgtaacggtgtttcgtcgcggttgtaacggcatttcgtcgtgatttttgttcactctgtatgtaa |
25967884 |
T |
|
| Q |
300 |
aaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
|||||||| ||||| ||| |||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
25967883 |
aaacggtggaaaacggtaacgtccgctacctatacctttttgtcgcagccttattctcgg |
25967824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 123 - 358
Target Start/End: Complemental strand, 11440656 - 11440419
Alignment:
| Q |
123 |
agataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaa |
222 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| |||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
11440656 |
agataacattatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatcttaattgaaaaattatccggactatgtgtctattgtcatgaa |
11440557 |
T |
|
| Q |
223 |
cgacattttttac-ggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtgaaaaa-cagtagcg |
320 |
Q |
| |
|
|||||||||| || ||||||||||||| | | |||| | ||||||||| ||||| | ||||||||||| |||| |||| || ||||| | || |
|
|
| T |
11440556 |
tgacatttttttgtggttgtaacggtgtttcatcgaggctgtaatggcttttcgtcgtaacttttgttcactgtgtaaaaacagtaaaaaatcgataata |
11440457 |
T |
|
| Q |
321 |
tcatctacctatacctttttgtcgcggcctttttctcg |
358 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
11440456 |
tcgactacctatacctttttgccgcggcctttttctcg |
11440419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 13198069 - 13198262
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttc |
108 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||||| |||||||| |||| | ||| | ||||||||||||| | | ||||||||||||| |
|
|
| T |
13198069 |
ggattgtgattgtcgcggtgtgaattaatcacaacattgcacaactcttaaacaatgatcgtaactttgataacttaaactagacaaagatttggagttc |
13198168 |
T |
|
| Q |
109 |
taaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggatt |
203 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||| ||||||| ||||| |||| |||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
13198169 |
taaattagataaggagataac-ttatgtaatttatgatcaaatatgcactaagaatatgattttcatgtatctcaattgaaaaaatatccggatt |
13198262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 46308386 - 46308491
Alignment:
| Q |
55 |
cttaaataatgttaataatgtaaataacttaaactaa-agatagatttggagttctaaactagacta-ggagataacattatgtaatttatgattaaata |
152 |
Q |
| |
|
||||||||||| || ||| ||||||||||||| | | ||| |||||| ||||||||||||| |||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
46308386 |
cttaaataatgatagtaacttaaataacttaaattgagagagagatttagagttctaaacta-actaaggagataac-ttatgtaatttatgatcaaata |
46308483 |
T |
|
| Q |
153 |
tgtactaa |
160 |
Q |
| |
|
|||||||| |
|
|
| T |
46308484 |
tgtactaa |
46308491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 11440740 - 11440664
Alignment:
| Q |
17 |
gttgttgcggtgtgaattaatcacaacattgcacacctcttaaa---taatgttaataatgtaaataacttaaacta |
90 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
11440740 |
gttgtcgcggtgtgaattaatcacaacattgttcaactcttaaataataatgatagtaatgtaaataacttaaacta |
11440664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 29866202 - 29866152
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaa |
60 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29866202 |
gattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatcttaaa |
29866152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 32617559 - 32617907
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttc |
108 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| | || ||| | |||||||||||||| ||| | ||| ||||| |
|
|
| T |
32617559 |
ggattgcggttgtcgcggtgtaaattaatcacaacattgcacaactcttaaataacgatagtaacttgaataacttaaactagagaaatctttagagtt- |
32617657 |
T |
|
| Q |
109 |
taaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtg |
208 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| | || |
|
|
| T |
32617658 |
taaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaatacccggattctatg |
32617756 |
T |
|
| Q |
209 |
tttattgtcatgaacgacattttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtga |
308 |
Q |
| |
|
| ||||||||||||| ||||| || ||||||||||||||||||| | |||| | | | ||| ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
32617757 |
tctattgtcatgaactgcatttctttgggccgtaacggtgtttcgtcgcggctgtaacaacgtttcgtcgtaatttttgttcactctataaaaacggtga |
32617856 |
T |
|
| Q |
309 |
aaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
32617857 |
aaaacggtaacgtccgctacctatacctttttgtggcggcctttttctcgg |
32617907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 34664959 - 34664736
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttc |
108 |
Q |
| |
|
|||||| |||||| |||| ||||||||| ||||||||||||| || |||||||||| || ||| ||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
34664959 |
ggattgtggttgtcacggtatgaattaattacaacattgcacaacttttaaataatgatagtaacgtaaataacttaaactatagacagatatggagttc |
34664860 |
T |
|
| Q |
109 |
taaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtg |
208 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||| ||||| |||||||| |||| |||||||||||||||||| |||| |||| || || | || |
|
|
| T |
34664859 |
taaactagataagaagataacgttatgtaatttatgatcaaatacgtactaaa-atatgattttcatctatctcaattgaaacaatatccaatttctatg |
34664761 |
T |
|
| Q |
209 |
tttattgtcatgaacgacatttttt |
233 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
34664760 |
tctattgtcatgaacgacatctttt |
34664736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 9457797 - 9457552
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||| | |||||| |||| |
|
|
| T |
9457797 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagt |
9457701 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcg-aaaaaatacccggattat |
205 |
Q |
| |
|
||||||| || |||||||||| || |||||||||||| | ||||||| ||| |||| ||||| |||||||||||| | |||||||| | ||||| | |
|
|
| T |
9457700 |
tctaaacaaggtaaggagataac-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattct |
9457602 |
T |
|
| Q |
206 |
gtgtttattgtcatgaacgaca-ttttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
||| |||||||||||||| || |||||| |||| ||||||| ||||||| |
|
|
| T |
9457601 |
atgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgt |
9457552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 9461894 - 9461649
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||| | |||||| |||| |
|
|
| T |
9461894 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagt |
9461798 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcg-aaaaaatacccggattat |
205 |
Q |
| |
|
||||||| || |||||||||| || |||||||||||| | ||||||| ||| |||| ||||| |||||||||||| | |||||||| | ||||| | |
|
|
| T |
9461797 |
tctaaacaaggtaaggagataac-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaaaaatatctggattct |
9461699 |
T |
|
| Q |
206 |
gtgtttattgtcatgaacgaca-ttttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
||| |||||||||||||| || |||||| |||| ||||||| ||||||| |
|
|
| T |
9461698 |
atgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttcgt |
9461649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 12990695 - 12990544
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttc |
108 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||| || ||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
12990695 |
ggattgcagttgtcgcggtgtgaattagtcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttgaagttc |
12990596 |
T |
|
| Q |
109 |
taaactagactaggagataacattatgtaatttatgattaaatatgtactaaa |
161 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
12990595 |
taaactagataaggagataa-attatgtaatttatgatcaaatatgtattaaa |
12990544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 24699898 - 24700031
Alignment:
| Q |
123 |
agataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaa |
222 |
Q |
| |
|
||||||||||||||||| ||| || |||||| ||| ||| |||| |||||||||||||||||| ||||||||| |||| || || || |||||||| | |
|
|
| T |
24699898 |
agataacattatgtaatatattatcaaatatatacgaaaaatataattttcatctatctcaattgaaaaaatatccgggttttgggtctattgtcaatga |
24699997 |
T |
|
| Q |
223 |
cgaca--ttttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
||||| | |||| | |||||||||||||||||| |
|
|
| T |
24699998 |
cgacatctattttgccgccgtaacggtgtttcgt |
24700031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 9457553 - 9457469
Alignment:
| Q |
275 |
gtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| | | |||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
9457553 |
gtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactcgg |
9457469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 9461650 - 9461566
Alignment:
| Q |
275 |
gtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| | | |||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
9461650 |
gtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactcgg |
9461566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 359
Target Start/End: Complemental strand, 12990370 - 12990166
Alignment:
| Q |
158 |
taaagatattattttcatctatctcaatcg-aaaaaatacccggattatgtgtttattgtcatgaacgaca-ttttttacggccgtaacggtgtttcgtt |
255 |
Q |
| |
|
|||| |||| ||||||||| ||||||| | |||||||| || |||| | ||| ||||||||| ||||||| |||||| ||| |||||||| |||||| |
|
|
| T |
12990370 |
taaaaatatgattttcatcgatctcaactgcaaaaaatatccagattctatgtctattgtcataaacgacaattttttgtggctgtaacggtatttcgtc |
12990271 |
T |
|
| Q |
256 |
gtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtgaaaaa-cagtagcgtcatctacctatacctttttgtcgcggccttttt |
354 |
Q |
| |
|
| ||| | | | ||| || |||||||||||||||| || ||||||| ||||| | ||| |||| |||||||||||||||| |||| |||||||| |
|
|
| T |
12990270 |
gcagctgtaacgatgtttcgttgtgatttttgttcactccataaaaacggtcaaaaaacggtaacgtccactacctatacctttttatcgcagccttttt |
12990171 |
T |
|
| Q |
355 |
ctcgg |
359 |
Q |
| |
|
||||| |
|
|
| T |
12990170 |
ctcgg |
12990166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 41283664 - 41283293
Alignment:
| Q |
16 |
ggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaacta |
115 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| || || ||||| | || ||| |||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
41283664 |
ggttgtcgtggtgtgaattaatcacaacattgcacaacttttgaataaagatagtaacataaataacttaaactagagaaagatttgaagttctaaacta |
41283565 |
T |
|
| Q |
116 |
gactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcg-----aaaaaatacccggattatgtgtt |
210 |
Q |
| |
|
|| |||||||||| |||| ||||||||||| | || ||||||||| || |||||||||||||||||| | |||||||| | ||||| | ||| |
|
|
| T |
41283564 |
gataaggagataac-ttat-taatttatgatcagatttgtactaaaaatgggattttcatctatctcaattgaagaaaaaaaatatctggattttatgtc |
41283467 |
T |
|
| Q |
211 |
tattgtcatgaacgac-attttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtgaa |
309 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||| ||||||||||||| | | | ||||||| | ||||||||||||||||| |||| |||||||||| |
|
|
| T |
41283466 |
tattgtcatgagcgacaattttttgcggccgtaacgatgtttcgttgtggttgtaacggcttttcgacgtgatttttgttcactctgtaaaaacggtgaa |
41283367 |
T |
|
| Q |
310 |
aaacagtagcgtcatctacctatacctttttgtcgcggcctttttct------cggaccgttttttaaaacctt |
377 |
Q |
| |
|
|||| ||| |||| |||||||||| |||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
41283366 |
aaacggtaacgtccgctacctatacttttttgtcacgacctttttcttagtaacggaccgttttttaaaacctt |
41283293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 78 - 359
Target Start/End: Complemental strand, 19967612 - 19967335
Alignment:
| Q |
78 |
ataacttaaactaaagatagatttggagttctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatct |
177 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| |||||||||||| |||||||||| |||| |||||||| | |
|
|
| T |
19967612 |
ataacttaaactaaagaaagatttggagttctaaactagacaaggagtcaac-ttaggtaatttatgat-----atgtactaaaaatatgattttcatat |
19967519 |
T |
|
| Q |
178 |
atctcaatcgaaaaaatacccggattatgtgtttattgtcatgaacgacatttttta--cggccgtaacggtgtttcgttgtggctattatggcttttgg |
275 |
Q |
| |
|
|||||||| ||||||||| ||||||| | ||| | ||||| ||||| ||||||||| |||||||||| ||||||||| ||||| | | ||| ||| |
|
|
| T |
19967518 |
atctcaattgaaaaaatatccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtcatggctgtaacggcgtttcc |
19967419 |
T |
|
| Q |
276 |
tcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
||| |||||||||||||| |||| |||||||||||||| ||| | || |||||| |||||||||| || |||||||||||||| |
|
|
| T |
19967418 |
tcgagatttttgttcactctgtaaaaacggtgaaaaacggtaacttcggctacctgtacctttttgccgtggcctttttctcgg |
19967335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 22927072 - 22927270
Alignment:
| Q |
28 |
gtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactagactaggagata |
127 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| | ||| |||||||||||||||| ||||||||| | |||||||||||||| | |||||| |
|
|
| T |
22927072 |
gtgaattaatcacaacattgcccaactcttaaataatgaaagtaacataaataacttaaactagagatagattcgaggttctaaactagacaatgagata |
22927171 |
T |
|
| Q |
128 |
acattatgtaatttatgattaaa--tatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaacga |
225 |
Q |
| |
|
||| ||||| ||||||||| ||| | ||||| ||| |||| |||||||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
22927172 |
aca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaacga |
22927270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 39426087 - 39426292
Alignment:
| Q |
17 |
gttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactag |
116 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||| || ||| || || |||||||||||||||||| || ||||| ||||||| |||||||||| |
|
|
| T |
39426087 |
gttgtcgcggtgtgaattaattacaacattgcacaactcatacatattgatagtaatgtaaataacttaaa-tatagatatatttgga-ttctaaactat |
39426184 |
T |
|
| Q |
117 |
actaggagataacattatgtaatttatgattaaatatgtact-aaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattg |
215 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||| ||| ||||||||| ||||| | ||| ||||| |
|
|
| T |
39426185 |
ataaggagatgacattatgtaatttatgatcaaatatgtactaaaatatatgattttcatctatcttaattgaaaaaatatttggattctatgtctattg |
39426284 |
T |
|
| Q |
216 |
tcatgaac |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
39426285 |
tcatgaac |
39426292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 13424644 - 13424835
Alignment:
| Q |
25 |
ggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactagacta-gga |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||| || ||| |||||| || ||||||| |||| || ||| |
|
|
| T |
13424644 |
ggtgtgaattaatcacaacattgcacaactcttaaataatgaaact----taaataacttaaaatagagaaagatttagaattctaaaatagattaagga |
13424739 |
T |
|
| Q |
124 |
gataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatg |
220 |
Q |
| |
|
|||||| ||| || ||||||||| |||||||||||||| ||||||||||||| ||| ||||| ||||||||| ||||||| | ||| || ||||||| |
|
|
| T |
13424740 |
gataac-ttacgtgatttatgatcaaatatgtactaaaaatattattttcatttatttcaattgaaaaaatatccggattctatgtctactgtcatg |
13424835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 36491669 - 36491433
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| ||||||||| | |||||||| ||| || ||| ||||||||| ||||||| |||||||||| |||| |
|
|
| T |
36491669 |
acggattacggttgtcacggtgtgaattaatcataacattgcaaaattcttaaatgatgatagtaaagtaaataacataaactagagatagattttgagt |
36491570 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatg |
206 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||| || ||| | |
|
|
| T |
36491569 |
tctaaactagatgaggaaccaaca---------ttatgattaaatatgtactaaaaatatgattttcatctatcttaattgaaaaaatatccatattcta |
36491479 |
T |
|
| Q |
207 |
tgtttattgtcatgaacgacattttttacggccgtaacggtgtttc |
252 |
Q |
| |
|
|| |||||||| |||||||||| || |||||| || |||||||| |
|
|
| T |
36491478 |
tgacaattgtcataaacgacatttcttgcggccgcaatggtgtttc |
36491433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 20141542 - 20141758
Alignment:
| Q |
25 |
ggtgtgaattaatcacaacattgcacacctcttaaataatgt-taataatgtaaataacttaaactaaagatagatttggagttctaaactaga------ |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |||||| |||| |||||||| || ||||||||||| | || | || |||| |
|
|
| T |
20141542 |
ggtgtgaattaatcacaacaacgcactactcttaaataatgtataataacttaaacaacttaaattagagatagatttgaaattttcaattagagaaaga |
20141641 |
T |
|
| Q |
118 |
--cta--ggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttat |
213 |
Q |
| |
|
||| |||||||| ||||||||||||||| | |||| |||| ||||||||| ||||||||| |||| ||| | ||||||| | ||| | | ||| ||| |
|
|
| T |
20141642 |
gcctaaaggagataaaattatgtaatttatgttcaaatctgtaataaagatatgattttcatccatctaaattg-aaaaataacaggaatctttgtatat |
20141740 |
T |
|
| Q |
214 |
tgtcatgaacgacatttt |
231 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20141741 |
tgtcatgaacgacatttt |
20141758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 16341522 - 16341619
Alignment:
| Q |
131 |
ttatgtaatttat--gattaaatatgtactaaagatattattttcatctatctcaatcg--aaaaaatacccggattatgtgtttattgtcatgaacg |
224 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||| | |||||||| ||||||| | ||| |||||||||||||| |
|
|
| T |
16341522 |
ttatgtaatttatatgatcaaatatgtactaaaaatatgtttttcatctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacg |
16341619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 19967673 - 19967627
Alignment:
| Q |
3 |
caacacggattgcggttgttgcggtgtgaattaatcacaacattgca |
49 |
Q |
| |
|
|||||| |||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
19967673 |
caacactgattgcggttgtcgcagtgagaattaatcacaacattgca |
19967627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 37247694 - 37247653
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcaca |
51 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
37247694 |
gattgtggttgtcgcggtgtgaattaatcacaacaatgcaca |
37247653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 37794641 - 37794886
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttct |
109 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| || ||| || |||||||| || | ||| |||||||||||||| |
|
|
| T |
37794641 |
gattgcggttgtcgtggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttagataacttagaccagagaaagatttggagttct |
37794740 |
T |
|
| Q |
110 |
aaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgt |
209 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| |||||| ||||||||||| ||||||||| || |||| | ||| |
|
|
| T |
37794741 |
aaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcttctatctcaattgaaaaaatatccagattctatgt |
37794839 |
T |
|
| Q |
210 |
ttattgtcatgaacgaca--ttttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
| ||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
37794840 |
cttttgtcatgaacgacattttttttgcagccgtaacggtgtttcgt |
37794886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 17988974 - 17989223
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| || ||| |||||||||||||||| | | ||||||||||| |
|
|
| T |
17988974 |
acggattgcggttgtcgaggtgtgaattaatcacaatattgcacaactcttaaataatgatagtaacttaaataacttaaactagaaaaagatttggagt |
17989073 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatac--ccggatta |
204 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||| | || |||| |
|
|
| T |
17989074 |
tctaaactagataaggagataa-attatataatttatgatcaaatatgtactaaaaatatgattttcatcgatctcaattgaaaaaaaaaatccagattc |
17989172 |
T |
|
| Q |
205 |
tgtgtttattgtcatgaacgaca-ttttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
| ||| |||| ||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
17989173 |
tatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttcgt |
17989223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 19263824 - 19263669
Alignment:
| Q |
138 |
atttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaacgaca-ttttttacg |
236 |
Q |
| |
|
||||||||| ||||||||| |||| |||| |||||||||||||||||| |||| |||| | |||| | | | ||||||||||||||||| |||||| || |
|
|
| T |
19263824 |
atttatgatcaaatatgtattaaaaatatgattttcatctatctcaattgaaacaatatcttgattctatatctattgtcatgaacgacagttttttgcg |
19263725 |
T |
|
| Q |
237 |
gccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcac |
292 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | ||| ||| |||||||||||||| |
|
|
| T |
19263724 |
gccgtaacggtgtttaattgtggctataatgacgtttcgtcatgatttttgttcac |
19263669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 5430328 - 5430210
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttct |
109 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||| || ||| |||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
5430328 |
gattgtggttgtcgcggtgtgaattaatcacaatattgcacaactcttaaataatgatagtaacataaataacttaaactagagatagagttggatttct |
5430229 |
T |
|
| Q |
110 |
aaactagactaggagataa |
128 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
5430228 |
aaagtagataaggagataa |
5430210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 19263911 - 19263821
Alignment:
| Q |
11 |
attgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagattt |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||| |||||||||| |
|
|
| T |
19263911 |
attgcggttgttgcgctgtgaattaatcacaacattgcacaattcttaaataatgatagtaacataaataacttatactagagatagattt |
19263821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 35016457 - 35016553
Alignment:
| Q |
96 |
agatttggagttctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaa |
193 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
35016457 |
agatttggaattctaaactagataaggagataac-ttatataatttatgatcaaatatgtatcaaaaatatgattttcatctatctcaatcggaaaaa |
35016553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 5428701 - 5428609
Alignment:
| Q |
130 |
attatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaa |
222 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||| |||||||||||||||||| |||| |||| || ||| ||||| |||||||||||| |
|
|
| T |
5428701 |
attatgtaatttatgatcaattatgtactaataatatgattttcatctatctcaattgaaataatatccaaattttgtgtctattgtcatgaa |
5428609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 35016316 - 35016388
Alignment:
| Q |
13 |
tgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataactta |
85 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||||||||||||| || ||| ||||||||||| |
|
|
| T |
35016316 |
tgcggttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaacttaaataactta |
35016388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 17989222 - 17989300
Alignment:
| Q |
275 |
gtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttt |
353 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||| || |||||||||||||||||| | |||||||| |
|
|
| T |
17989222 |
gtcgtgatttttgttcacttagtaaaaacggtgaaaaacggtaatgttcgctacctatacctttttgttgtggcctttt |
17989300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 31806040 - 31806110
Alignment:
| Q |
122 |
gagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaa |
192 |
Q |
| |
|
||||||||||||| |||| |||| | |||||| ||||||| || ||||| ||||| |||||||| |||||| |
|
|
| T |
31806040 |
gagataacattatataatctatgttcaaatatatactaaaaatgttattctcatccatctcaatagaaaaa |
31806110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 20929917 - 20929880
Alignment:
| Q |
14 |
gcggttgttgcggtgtgaattaatcacaacattgcaca |
51 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
20929917 |
gcggttgtcgcggtgtgaattaatcacaacaatgcaca |
20929880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 35016693 - 35016726
Alignment:
| Q |
325 |
ctacctatacctttttgtcgcggcctttttctcg |
358 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
35016693 |
ctacctatacctttttgtcgcggccattttctcg |
35016726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 6e-57; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 23489962 - 23490181
Alignment:
| Q |
13 |
tgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||| || || ||| || | ||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
23489962 |
tgcggttgttgcggtgtgaattaatcacaacattgtacaactcttaaatactgatagtaacttagacaacataaactagagaaagatttggagttctaaa |
23490061 |
T |
|
| Q |
113 |
ctagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgttta |
212 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||| | ||| || |
|
|
| T |
23490062 |
ctagataaggagataac-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttcatctatctcaattgaaaaaatatccggatgctatgtcta |
23490160 |
T |
|
| Q |
213 |
ttgtcatgaacgacatttttt |
233 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
23490161 |
ttgtcatgaacggcatttttt |
23490181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 13402265 - 13402173
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagat |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| || ||| ||||||||||||||||||| |||||| |
|
|
| T |
13402265 |
acggattgcggttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaactaaaaatagat |
13402173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 7154302 - 7154465
Alignment:
| Q |
54 |
tcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactagactaggagataacattatgtaatttatgattaaatat |
153 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| | |||||||||| ||||||| || ||| |||||||| |||||||||| |||||| |||||| |
|
|
| T |
7154302 |
tcttaaataatgataataccgtaaataacttaaaccatagatagattttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatat |
7154401 |
T |
|
| Q |
154 |
gtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtc |
217 |
Q |
| |
|
||| |||| |||| |||||||||||||| || |||||| | | ||||||||||||||||||| |
|
|
| T |
7154402 |
gtattaaaaatatgattttcatctatcttcatttaaaaaacatcaggattatgtgtttattgtc |
7154465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 13396965 - 13396882
Alignment:
| Q |
9 |
ggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaa |
92 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
13396965 |
ggattgcggctgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaactaaa |
13396882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 23490204 - 23490286
Alignment:
| Q |
275 |
gtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctc |
357 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||| ||| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23490204 |
gtcgtgatttttgttcactctgtaaaaatggtgaaaaatggtaacttcggctacctatacctttttgtcgcggcctttttctc |
23490286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 10473844 - 10473968
Alignment:
| Q |
236 |
ggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggtgaaaaacagtagcgtcatctacctat--- |
332 |
Q |
| |
|
||||||||| ||||||||| | ||| | ||| | ||| ||||||||||||||||||| |||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
10473844 |
ggccgtaacagtgtttcgtcgcagctgtaatgtcgtttcgtcgtgatttttgttcactctgtaaaaacagtgaaaaacagtaatgtcggctacctatacc |
10473943 |
T |
|
| Q |
333 |
acctttttgtcgcggcctttttctc |
357 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
10473944 |
acctttttgtcacggcctttttctc |
10473968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 45191665 - 45191814
Alignment:
| Q |
148 |
aaatatgtactaaagatattattttcatctatctcaatcgaa-----aaaatacccggattatgtgtttattgtcatgaacgacattttttacggccgta |
242 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||| || ||| |||||| | | ||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
45191665 |
aaatatgtactaaaagtatgattttcacctatctctattgaagaaaaaaaatatctgaattttgtgtccattgtcatgaacgacatttttggcggccgta |
45191764 |
T |
|
| Q |
243 |
acggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcac |
292 |
Q |
| |
|
|||||||||||| | | || | ||| | ||| |||||||||||||||||| |
|
|
| T |
45191765 |
acggtgtttcgtcgcgactgtaatgacgtttcgtcgtgatttttgttcac |
45191814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 14867355 - 14867424
Alignment:
| Q |
123 |
agataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaa |
192 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||| || | ||||||||| |||||||| |||||| |
|
|
| T |
14867355 |
agataacatcatgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaaa |
14867424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 14370848 - 14370801
Alignment:
| Q |
25 |
ggtgtgaattaatcacaacattgcacacctcttaaataatgttaataa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
14370848 |
ggtgtgaattaatcacaacattgcacaactcttacttaatgataataa |
14370801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 7299267 - 7299043
Alignment:
| Q |
30 |
gaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactagactaggagataac |
129 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||| | || ||| ||||||||||||||||| ||||||||||| | ||||||| |||| |||||||||| |
|
|
| T |
7299267 |
gaattaaccacaacattgtacaactcttaaataacgatagtaacgtaaataacttaaactagagatagatttgaa-ttctaaagtagataaggagataac |
7299169 |
T |
|
| Q |
130 |
attatgtaatttatgattaaatatgtactaaagatattattttcatc-tatctcaatcgaaaaaatacccggattatgtgtttattgtcatgaacgacat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| |||||||| ||||||||| ||||||||| ||||||| ||| | || ||||||||||| ||| |
|
|
| T |
7299168 |
attatgtaatttatgattaaatatgtacttaaaatatggttttcatcgtatctcaattgaaaaaatatccggattttgtctctagtgtcatgaacggcat |
7299069 |
T |
|
| Q |
229 |
tttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
||||| ||||||||| ||| |||||| |
|
|
| T |
7299068 |
tttttgcggccgtaaaggtctttcgt |
7299043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 11783393 - 11783640
Alignment:
| Q |
7 |
acggattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagt |
106 |
Q |
| |
|
|||||||| |||||| || |||||| |||| ||||||||||||| ||||||||||||| || ||| |||| ||||||||| | ||||||||||||||| |
|
|
| T |
11783393 |
acggattgtggttgtcgctttgtgaagtaattacaacattgcacaactcttaaataatgatagtaacataaagaacttaaacaagagatagatttggagt |
11783492 |
T |
|
| Q |
107 |
tctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcg-aaaaaatacccggattat |
205 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||| | |||||||| ||||| | | |
|
|
| T |
11783493 |
tctaaactagacaaggagacaacattgtgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaaatatccggagtct |
11783592 |
T |
|
| Q |
206 |
gtgtttattgtcatgaacgacattttttacggccgtaacggtgtttcgt |
254 |
Q |
| |
|
| | ||||| |||||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
11783593 |
atttctattgccatgaaaggca-tttttgcggccgtaacagtgtttcgt |
11783640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 21926543 - 21926593
Alignment:
| Q |
129 |
cattatgtaatttatgattaaatatgtactaaagatattattttcatctat |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
21926543 |
cattatgtaatttatgattaaatatgtactgaaaatatgattttcatctat |
21926593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 19596541 - 19596636
Alignment:
| Q |
123 |
agataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcat |
219 |
Q |
| |
|
|||||||||||||||| ||||| | |||| ||||||||| |||| ||||| ||| | |||||| | ||||||| ||||||| | |||||||||||| |
|
|
| T |
19596541 |
agataacattatgtaacttatgttcaaatttgtactaaaaatatgatttttatccacctcaattg-aaaaataaccggattctcagtttattgtcat |
19596636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 53527230 - 53527191
Alignment:
| Q |
25 |
ggtgtgaattaatcacaacattgcacacctcttaaataat |
64 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
53527230 |
ggtgtgaattaatcacaacattgcacaacttttaaataat |
53527191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 46475750 - 46475662
Alignment:
| Q |
32 |
attaatcacaacattgcacacctcttaaataatgt-taataatgtaaataa--cttaaactaaagatagatttggagttctaaactaga |
117 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||||| | ||||| ||||||| |||||| || | ||||||||| || ||||||||||| |
|
|
| T |
46475750 |
attattcacaacattgcaaaactcttaaataatgtattataatttaaataactcttaaattagaaatagatttgaagctctaaactaga |
46475662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 9177759 - 9177584
Alignment:
| Q |
23 |
gcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttctaaactagactagg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9177759 |
gcggtgtgaattaatcacaacattgcacaactcttgaataatgatagtaacgtaaataacttaaactaaagatagatttggagttctaaactag---gtg |
9177663 |
T |
|
| Q |
123 |
agataacattatgtaatttatga------ttaaatatgtactaaagatattattttcatctatctcaatcgaaaaaata |
195 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| |||||||| ||||||||| |
|
|
| T |
9177662 |
agataacattatgtaatttatgatcaaattcaaatatgtactaaaaatatgattttcatcaatctcaattgaaaaaata |
9177584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 10117259 - 10117103
Alignment:
| Q |
98 |
atttggagttctaaactagactaggagataacattatgtaatttatgattaaatatgtactaaagatattattttca-----tctatctcaatcgaaaaa |
192 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| | |||| |
|
|
| T |
10117259 |
atttggagttctaaactagataaggagatta--ttatgtaatttatgatcaaatatgtactaaaaatatgattttcaattcatctatctcaattggaaaa |
10117162 |
T |
|
| Q |
193 |
atacccggattatgtgtttattgtcatgaacgacattttttacggccgtaacggtgttt |
251 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
10117161 |
atatccggattctgtgtctattgtcatgaacgacattttttgcggccttaacagtgttt |
10117103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 120 - 306
Target Start/End: Complemental strand, 32296434 - 32296248
Alignment:
| Q |
120 |
aggagataacattatgtaatttatgattaaatatgtactaaagatattattttcatctatctcaatcgaaaaaatacccggattatgtgtttattgtcat |
219 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||| | |||| ||||| ||||||||| |
|
|
| T |
32296434 |
aggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaatattcagattttgtgtctattgtcat |
32296335 |
T |
|
| Q |
220 |
gaacgacattttttacggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatgtagaaacggt |
306 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||| ||| || | || ||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
32296334 |
gaaccgcattttttgtggccgtaacaatgtttcgtcacggcgataacggtgtttcatcgtgatttttgttcactctgtaaaaacggt |
32296248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26660607 - 26660726
Alignment:
| Q |
11 |
attgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttcta |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| | || ||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
26660607 |
attgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttcta |
26660706 |
T |
|
| Q |
111 |
aactagactaggagataaca |
130 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
26660707 |
aactatacaaggagataaca |
26660726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26766578 - 26766697
Alignment:
| Q |
11 |
attgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgttaataatgtaaataacttaaactaaagatagatttggagttcta |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| | || ||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
26766578 |
attgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttcta |
26766677 |
T |
|
| Q |
111 |
aactagactaggagataaca |
130 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
26766678 |
aactatacaaggagataaca |
26766697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 8169126 - 8169287
Alignment:
| Q |
198 |
cggattatgtgtttattgtcatgaacgacattttttac-ggccgtaacggtgtttcgttgtggctattatggcttttggtcgtgatttttgttcactatg |
296 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||||||| ||||||||||||||||||| | |||| | | | | ||| ||||||||||||||||||| || |
|
|
| T |
8169126 |
cggattctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcggctgtaacgacgtttcgtcgtgatttttgttcactctg |
8169225 |
T |
|
| Q |
297 |
tagaaacggtgaaaaacagtagcgtcatctacctatacctttttgtcgcggcctttttctcgg |
359 |
Q |
| |
|
|| ||| ||||||||| ||| |||| ||||||||||| |||||||| | |||||||||||| |
|
|
| T |
8169226 |
taaaaatagtgaaaaacggtaacgtcgactacctatacc-ttttgtcgtgacctttttctcgg |
8169287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 30908 - 30867
Alignment:
| Q |
10 |
gattgcggttgttgcggtgtgaattaatcacaacattgcaca |
51 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30908 |
gattgtggttgttgcagtgtgaattaatcacaacaatgcaca |
30867 |
T |
|
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