View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720-Insertion-7 (Length: 508)
Name: NF4720-Insertion-7
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 34230726 - 34231219
Alignment:
| Q |
9 |
tacctacatacaaaaagtaacaaatagttcctcaaatagaagtactccacaaatagatagatatctctaaaaggatgtgattcctagcaagagtcttcct |
108 |
Q |
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| T |
34230726 |
tacctacatacaaaaagtaacaaatagttcctcaaatagaagtactccacaaatagatagatatctctaaaaggatgtgattcctagcaagagtcttcct |
34230825 |
T |
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| Q |
109 |
gaataacactacaaaattcttctttaagcatcataacctttcaagttttataaggttaaaggatc--accccattgacttaaaaactataagagctgcta |
206 |
Q |
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| T |
34230826 |
gaataacactacaaaattcttctttaagcatcataacctttcaagttttataaggctaaaggatctgcacccattgacttaaaaactataagagctgcta |
34230925 |
T |
|
| Q |
207 |
aaagaacatattctacaagagatatctagtccccacccgagatatgtagaaaaccagtgnnnnnnnnnnnngttggacaatcttcaagctgtctctggtc |
306 |
Q |
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| T |
34230926 |
aaagaacatattctacaagagatatctagtccccacccgagatatgtagaaaaccagtgaaaaaataaaaagttggacaatcttcaagctgtctctggtc |
34231025 |
T |
|
| Q |
307 |
aaccattcaatatcaagctaccatgcatttgtaattaaaagtacagtagttttgcattgaaaacgatttttgagcttgtaaaaagttgaattcatcactt |
406 |
Q |
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| T |
34231026 |
aaccattcaatatcaagctaccatgcatttgtagttaaaagtacagtagttttgcattgaaaacgatttttgagcttgtaaaaagttgaattcatcactt |
34231125 |
T |
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| Q |
407 |
ttcaacaccacatttctatatttgtttcttttcttcagcattttccatattgtttatagatgaatgttagtaaatttaatttttatttaacttt |
500 |
Q |
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| T |
34231126 |
ttcaacaccacatttctatatttgtttcttttcttcagcattttccatattgtttatagataaatgttagtaaatttaatttttatttaacttt |
34231219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 21051594 - 21051643
Alignment:
| Q |
388 |
aaagttgaattcatcacttttcaacaccacatttctatatttgtttcttt |
437 |
Q |
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| T |
21051594 |
aaagttgaattcaccatttttcaacacaatatttctatatttgtttcttt |
21051643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 45257690 - 45257648
Alignment:
| Q |
372 |
atttttgagcttgtaaaaagttgaattcatcacttttcaacac |
414 |
Q |
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| T |
45257690 |
attttttagcttttaaaaagttgaattcaccacttttcaacac |
45257648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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