View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720_high_1 (Length: 420)
Name: NF4720_high_1
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 41161441 - 41161091
Alignment:
| Q |
19 |
aaaactgatcaagatacaacgtttacatatactgatgaaagagtaatgtaacaagcatcatcaaaattgacaaaatgtgcagttacagttcacaaagaat |
118 |
Q |
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| T |
41161441 |
aaaactgatcaagatacaacgtttacatatactgatgaatgagtaatgtaacaagcatcatcaaaattgacataatgtgcagttacagttcacaaagaat |
41161342 |
T |
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| Q |
119 |
ccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaatcttgatataaaacacaggagatgcaagtaataattcatatatgct |
218 |
Q |
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| T |
41161341 |
ccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaatcttgatataaaacacaggagatgcaagtaataattcatatatgct |
41161242 |
T |
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| Q |
219 |
ctagatcaaactgtatttatccttatactattactagtaattctttacaaaatccacaaaagattcttcattgaggacagcatttgaggaagaacctgta |
318 |
Q |
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| T |
41161241 |
ctagatcaaactgtatttatccttatactattactagtaattctttacaaaatccacaaaagattcttcgttgaggacagcatttgaggaagaacctgta |
41161142 |
T |
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| Q |
319 |
gaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
369 |
Q |
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| T |
41161141 |
gaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
41161091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 41163707 - 41163663
Alignment:
| Q |
327 |
taattttgtttgacatggttagtgctgcaagacttttattcccct |
371 |
Q |
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| T |
41163707 |
taattttgtttgacatggttagtgctgcaggacttttattcccct |
41163663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 41150210 - 41150256
Alignment:
| Q |
23 |
ctgatcaagatacaacgtttacatatactgatgaaagagtaatgtaa |
69 |
Q |
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| T |
41150210 |
ctgatcaagatgtaacatttacatatactgatgaatgagtaatgtaa |
41150256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 3734393 - 3734436
Alignment:
| Q |
26 |
atcaagatacaacgtttacatatactgatgaaagagtaatgtaa |
69 |
Q |
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| T |
3734393 |
atcaagatataacatttacatatactgatgaatgagtaatgtaa |
3734436 |
T |
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