View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4720_high_10 (Length: 218)
Name: NF4720_high_10
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_high_10 |
 | |
|
| [»] chr7 (14 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4711917 - 4711700
Alignment:
| Q |
1 |
tttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatatacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711917 |
tttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatatacc |
4711818 |
T |
|
| Q |
101 |
atttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711817 |
atttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaa |
4711718 |
T |
|
| Q |
201 |
aagaaggcatagacacaa |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4711717 |
aagaaggcatagacacaa |
4711700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 4672970 - 4673170
Alignment:
| Q |
18 |
gaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtc |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| |||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
4672970 |
gaaaatcattgtcccaattacgaaacataccagtatcgtcacccggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttc |
4673069 |
T |
|
| Q |
118 |
gttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||| | |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4673070 |
gttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacaca |
4673169 |
T |
|
| Q |
218 |
a |
218 |
Q |
| |
|
| |
|
|
| T |
4673170 |
a |
4673170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 4637111 - 4637324
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||||||||||||||| || ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
4637111 |
tccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatcatcacttggtggaacttgattttgaccaacgttgactctataaaccatct |
4637210 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| || |||||| || ||||||| ||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
4637211 |
ccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaatagtaatttgggtcattgaggtttgtgtaatagagaaaaga |
4637310 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4637311 |
aggcattgacacaa |
4637324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 4697031 - 4696818
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||| ||| | | |
|
|
| T |
4697031 |
tccaagtaacgaggaaaatcattgtcccagttacgaaacataccagtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtct |
4696932 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
| || |||||||||||| ||| |||||| ||| ||||||| |||||||||||| ||||| | |||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
4696931 |
ctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatcaaatgatattttgggtcactgaggtttgtgtaatagagaaaaga |
4696832 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4696831 |
aggcattgacacaa |
4696818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 4783676 - 4783463
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
4783676 |
tccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtct |
4783577 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
| |||||||||| |||| ||| ||| || |||||||||||||| || || | || | ||| || | | ||||| | |||| ||||||||||||||||| |
|
|
| T |
4783576 |
ctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgataagataatcttggtcactgaggtttgtgtaatagagaaaaga |
4783477 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4783476 |
aggcatagacacaa |
4783463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 4816105 - 4815892
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
4816105 |
tccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtct |
4816006 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
| |||||||||| |||| ||| ||||||||||||||||||| | || || | || | | | || | | ||||| | |||| ||||||||||||||||| |
|
|
| T |
4816005 |
ctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaaga |
4815906 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4815905 |
aggcatagacacaa |
4815892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 4864176 - 4864387
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| ||| || ||||||||||| ||| | | |
|
|
| T |
4864176 |
tccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcatcacccggtggaacttgactttcaccgacattgactctataaaccgtct |
4864275 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
| || |||||||||||| ||| |||||| | |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
4864276 |
ctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaaga |
4864375 |
T |
|
| Q |
205 |
aggcatagacac |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4864376 |
aggcatagacac |
4864387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 4643961 - 4644089
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| | |
|
|
| T |
4643961 |
tccaagtaacgaggataatcattgtcccaattacgaaacatacctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatct |
4644060 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtat |
133 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |
|
|
| T |
4644061 |
ccaaagctttgtcattaagaatttggtat |
4644089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 4667195 - 4667408
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| ||||||| |||||||||| ||| | | |
|
|
| T |
4667195 |
tccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcgtcaccaggtggaacttgactttcaccaacgctgactctataaaccgtct |
4667294 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
||| |||||||| |||| |||| |||||||| || |||||||||||||| || ||||| | || ||||||||| | |||| ||||||||||||||||| |
|
|
| T |
4667295 |
ccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaatgataatttgggtcactgaggtttgtgtaatagagaaaaga |
4667394 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4667395 |
cggcatagacacaa |
4667408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 4631181 - 4631394
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| || ||| |
|
|
| T |
4631181 |
tccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcataatttggtggaacttgattttcaccagcgttgactctataaactgttt |
4631280 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
||| |||||||| |||| |||| |||||||| | ||||||| |||||| || ||| |||| || | |||| | || | ||||||||||||||||| |
|
|
| T |
4631281 |
ccatagctttgttgttaagaatctggtattcaccgctgtcaaaatcaagtatctttaaatggtagttcgtgtcactgagattagtgtaatagagaaaaga |
4631380 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4631381 |
aggcatagacacaa |
4631394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 4845853 - 4845640
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
104 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||||||||||||||| | ||||| |||||||||||| |||||| ||||||||||| ||||| | |
|
|
| T |
4845853 |
tccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatct |
4845754 |
T |
|
| Q |
105 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
204 |
Q |
| |
|
|||||||||| || ||| |||||| |||||| ||||||||||| ||| | |||| ||| || ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
4845753 |
ccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaataataatttaagtcatctgggtttgtgtaatagagaaaaga |
4845654 |
T |
|
| Q |
205 |
aggcatagacacaa |
218 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4845653 |
aggcatcgacacaa |
4845640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 4653798 - 4653865
Alignment:
| Q |
29 |
tcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctata |
96 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4653798 |
tcccaattacgaaacaaaccagtatctaggtttggtggaacttgattttcaccaacgttgacactata |
4653865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 4644144 - 4644174
Alignment:
| Q |
188 |
gtgtaatagagaaaagaaggcatagacacaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4644144 |
gtgtaatagagaaaagaaggcatagacacaa |
4644174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 4653935 - 4653963
Alignment:
| Q |
190 |
gtaatagagaaaagaaggcatagacacaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4653935 |
gtaatagagaaaagaaggcatagacacaa |
4653963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 18925583 - 18925492
Alignment:
| Q |
5 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctata |
96 |
Q |
| |
|
|||| |||| |||||||||| ||||||||| ||||||||||||||| || | || ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
18925583 |
tccaagtaacgaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatcaccaacgctgactctata |
18925492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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