View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720_high_11 (Length: 216)
Name: NF4720_high_11
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 45142374 - 45142191
Alignment:
| Q |
15 |
cacagacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
114 |
Q |
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| T |
45142374 |
cacacacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
45142275 |
T |
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| Q |
115 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatat |
198 |
Q |
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| T |
45142274 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatat |
45142191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
59 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
110 |
Q |
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| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
86 |
atcctcactgaggtcgatctcatcactatgatcaag |
121 |
Q |
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| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
86 |
atcctcactgaggtcgatctcatcactatgatcaag |
121 |
Q |
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| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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