View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720_high_2 (Length: 337)
Name: NF4720_high_2
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 5681298 - 5681612
Alignment:
| Q |
18 |
aggaactagctatattatatagtttaattagttacatgataggtattaggtaggtagggtatggaagaagaagatagggaatattgttgttcgatgaatt |
117 |
Q |
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| T |
5681298 |
aggaactagctatattatatagtttaattagttacatgataggtattaggtaggtagggtatggaagaagaagatagggaatattgttgttcgatgaatt |
5681397 |
T |
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| Q |
118 |
caagaacatccaatagccctatagctatagatcataaaaataacaataacaataaggggatgnnnnnnnnnnnnnnngctatgaaaccatatagaggaat |
217 |
Q |
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| T |
5681398 |
caagaacaaccaatagccctatagctatagatcataaaaataacaataacaataaggggatgaaaaaagagaaaaaagctatgaaaccatatagaggaat |
5681497 |
T |
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| Q |
218 |
aaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgca |
317 |
Q |
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| T |
5681498 |
aaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgca |
5681597 |
T |
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| Q |
318 |
cgtgcctatgctact |
332 |
Q |
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| T |
5681598 |
cgtgcttatgatact |
5681612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 47038527 - 47038402
Alignment:
| Q |
200 |
gaaaccatatagaggaataaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacata |
299 |
Q |
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| T |
47038527 |
gaaaccatacagaggaataaggaagagaaagtggggtaagtgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacatc |
47038428 |
T |
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| Q |
300 |
acacctattgctgctgcacgtgccta |
325 |
Q |
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| T |
47038427 |
actccggtagctgctgctcgtgccta |
47038402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 32669905 - 32669953
Alignment:
| Q |
247 |
cagagattagagaaccaaacaaaagatcaagaatttggttaggttctta |
295 |
Q |
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| T |
32669905 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttctta |
32669953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 6026620 - 6026690
Alignment:
| Q |
222 |
atgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttc |
292 |
Q |
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| T |
6026620 |
atgagaaagtggggaaaatgggtagctgaaattcgagaaccaaacaaacgttctcgaatttggttaggttc |
6026690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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