View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720_low_4 (Length: 266)
Name: NF4720_low_4
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 10337962 - 10338209
Alignment:
| Q |
4 |
gagatgaaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgagaggtatatc |
103 |
Q |
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| T |
10337962 |
gagatgaaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgagaggtatatc |
10338061 |
T |
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| Q |
104 |
aggtggtgagaaaaggagagtgagtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggattctaccact |
203 |
Q |
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| T |
10338062 |
aggtggtgagaaaaggagagtgagtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggattctaccact |
10338161 |
T |
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| Q |
204 |
gctttgagaatcttaaacactatcaaaaaacttgctagtggtggtaga |
251 |
Q |
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| T |
10338162 |
gctttgagaatcttaaacactatcaaaaaacttgctagtggtggtaga |
10338209 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 33718601 - 33718674
Alignment:
| Q |
126 |
agtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggattctac |
199 |
Q |
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| T |
33718601 |
agtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctggtttggattctac |
33718674 |
T |
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