View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4720_low_5 (Length: 255)

Name: NF4720_low_5
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4720_low_5
NF4720_low_5
[»] chr4 (15 HSPs)
chr4 (2-229)||(7053031-7053259)
chr4 (4-148)||(7047049-7047193)
chr4 (4-145)||(7020348-7020489)
chr4 (4-91)||(7027261-7027348)
chr4 (4-87)||(7039667-7039750)
chr4 (1-75)||(7004420-7004494)
chr4 (73-144)||(7027360-7027431)
chr4 (11-79)||(7013979-7014047)
chr4 (30-77)||(6994570-6994617)
chr4 (172-243)||(53432084-53432155)
chr4 (176-224)||(28589807-28589855)
chr4 (173-216)||(669695-669738)
chr4 (171-229)||(2162630-2162688)
chr4 (173-229)||(668409-668465)
chr4 (171-215)||(40792772-40792816)
[»] chr8 (6 HSPs)
chr8 (170-224)||(28735008-28735062)
chr8 (172-229)||(41743652-41743709)
chr8 (170-242)||(45437506-45437578)
chr8 (170-242)||(38696328-38696400)
chr8 (172-224)||(45394989-45395041)
chr8 (171-215)||(32693851-32693895)
[»] chr3 (5 HSPs)
chr3 (171-229)||(28909642-28909700)
chr3 (176-229)||(37735332-37735385)
chr3 (170-221)||(20288269-20288320)
chr3 (170-229)||(42684896-42684955)
chr3 (171-224)||(3208505-3208558)
[»] chr1 (3 HSPs)
chr1 (174-215)||(30535720-30535761)
chr1 (170-229)||(15746803-15746862)
chr1 (172-229)||(42245924-42245981)
[»] chr2 (9 HSPs)
chr2 (28-71)||(5859195-5859238)
chr2 (170-229)||(30749330-30749389)
chr2 (170-224)||(34512834-34512888)
chr2 (170-216)||(35061291-35061337)
chr2 (176-229)||(2277506-2277559)
chr2 (176-229)||(34147162-34147215)
chr2 (176-229)||(34148397-34148450)
chr2 (170-223)||(34513596-34513649)
chr2 (170-242)||(34463988-34464060)
[»] scaffold2071 (1 HSPs)
scaffold2071 (171-229)||(718-776)
[»] chr5 (4 HSPs)
chr5 (170-224)||(1009204-1009258)
chr5 (171-229)||(30857821-30857879)
chr5 (176-229)||(32759085-32759138)
chr5 (170-224)||(8523788-8523842)
[»] scaffold0078 (1 HSPs)
scaffold0078 (176-229)||(18838-18891)
[»] scaffold0011 (1 HSPs)
scaffold0011 (170-242)||(127453-127525)
[»] chr7 (2 HSPs)
chr7 (176-224)||(46201157-46201205)
chr7 (170-229)||(47060512-47060571)
[»] chr6 (2 HSPs)
chr6 (176-223)||(7310302-7310349)
chr6 (173-229)||(17593604-17593660)
[»] scaffold0034 (1 HSPs)
scaffold0034 (170-224)||(108533-108587)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 7053031 - 7053259
Alignment:
Q  2 agagaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattattaccaatttagtttacacattttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  7053031 agagaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactgtatgcggtaatattattaccaatttagtttgcacattttg 7053130  T
Q  102 tctgtgtaaatgcatcgaatcatatgtcaccatgtagatatttgcaaggcttaataggtca-nnnnnnncctaattaattttcagtttacattttggttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  7053131 tctgtgtaaatgcatcgaatcatatgtcaccatgtagatatttgcaaggcttaataggtcattttttcccctaattaattttcagtttacattttggttc 7053230  T
Q  201 cataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||||||||||| |||||||||    
T  7053231 cataattaataaaacttatatttttgtcc 7053259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 7047049 - 7047193
Alignment:
Q  4 agaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattattaccaatttagtttacacattttgtc 103  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||    
T  7047049 agaagataactatcaaatccagtatgctcatggaatgggactcatctctgatgaactttatgcggtgatattattaccaatttagtttgtacattttgtc 7047148  T
Q  104 tgtgtaaatgcatcgaatcatatgtcaccatgtagatatttgcaa 148  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  7047149 ggtgtaaatgcatcgaatcatatgtcaccatgtagatatttgcaa 7047193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 7020348 - 7020489
Alignment:
Q  4 agaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattattaccaatttagtttacacattttgtc 103  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |  | || || ||    
T  7020348 agaatataattatcgaatccaatatgctcatggaatgggactcatctctgatgaactctattcggtaatattattaccaatttaatatgtatatattatc 7020447  T
Q  104 tgtgtaaatgcatcgaatcatatgtcaccatgtagatatttg 145  Q
     |||||||||||| ||||||||| ||||  ||||||||||||    
T  7020448 ggtgtaaatgcatggaatcatatatcacattgtagatatttg 7020489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 7027261 - 7027348
Alignment:
Q  4 agaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattattaccaatttagttt 91  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  7027261 agaagataattatcaaatccagtatgctcatggaatgggactcatctctgatgaactttatgcggtaatattattaccaattttgttt 7027348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 7039667 - 7039750
Alignment:
Q  4 agaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattattaccaattta 87  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  7039667 agaagataattatcaaatcccatatgctcatggaatgggactcatctcggatgaactctatgcggtaatattattaccaattta 7039750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7004420 - 7004494
Alignment:
Q  1 cagagaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatatt 75  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7004420 cagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcggtattatt 7004494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 7027360 - 7027431
Alignment:
Q  73 attattaccaatttagtttacacattttgtctgtgtaaatgcatcgaatcatatgtcaccatgtagatattt 144  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  7027360 attattaccaatttagtttgtacattttgtcgttgtaaatgcatcgaatcatatgtcacaatgtagatattt 7027431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 7013979 - 7014047
Alignment:
Q  11 aattatcgaattcaatatgctcatggaatgggactcatctctgatgaactatatgcggtaatattatta 79  Q
    ||||||| ||| | |||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  7013979 aattatcaaatcccatatgctcatggaatggggctcatttctgatgaactctatgcggtattattatta 7014047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 6994570 - 6994617
Alignment:
Q  30 ctcatggaatgggactcatctctgatgaactatatgcggtaatattat 77  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  6994570 ctcatggaatgggactcatttctgatgaactttatgcggtattattat 6994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 53432084 - 53432155
Alignment:
Q  172 taattaattttcagtttacattttggttccataattaataaaacttatgtttttgtccatcctgtttgcctt 243  Q
    ||||||||||  ||||| ||||||||| |||||| |||||||||||||||||| |||| ||  |||||||||    
T  53432084 taattaatttcaagttttcattttggtcccataagtaataaaacttatgttttggtccctcaagtttgcctt 53432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 28589807 - 28589855
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||||| ||||||||| |||||| || |||||||||||||||    
T  28589807 taattttcagttttcattttggtcccataagtattaaaacttatgtttt 28589855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 669738 - 669695
Alignment:
Q  173 aattaattttcagtttacattttggttccataattaataaaact 216  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||    
T  669738 aattaattttcaattttcattttggtcccataattaataaaact 669695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 2162630 - 2162688
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||||||||| |||||| || |||||| |||||||||| || |||| ||||    
T  2162630 ctaattaattttcagttttcattttagtcccataactaataaaactcatattttggtcc 2162688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 668409 - 668465
Alignment:
Q  173 aattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||||||| |||||||||  ||||| |||||||||| | ||||| ||||    
T  668409 aattaattttcagttttcattttggtctcataactaataaaactcacgttttggtcc 668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 40792772 - 40792816
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaac 215  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  40792772 ctaattaattttaagttttcattttggtcccacaattaataaaac 40792816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 28735008 - 28735062
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||    
T  28735008 cctaattaattttaagtgttcattttggttccataattaataaaactcatgtttt 28735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 41743709 - 41743652
Alignment:
Q  172 taattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||| ||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  41743709 taattaattttaagttttcattttggtcccataagtaataaaacttatgttttggtcc 41743652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 45437578 - 45437506
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtccatcctgtttgcct 242  Q
    ||||||||||||  ||||| ||||||| | ||||||||||||||||| ||||||| |||| || |||||||||    
T  45437578 cctaattaatttcaagttttcattttgatcccataattaataaaactcatgttttggtccctcgtgtttgcct 45437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 38696328 - 38696400
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtccatcctgtttgcct 242  Q
    ||||||||||||| ||||| |||||||||  ||||| |||||||||| ||||||| |||| ||  ||||||||    
T  38696328 cctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccctcaagtttgcct 38696400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 45394989 - 45395041
Alignment:
Q  172 taattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||||| |||||||    
T  45394989 taattaattttaagttttcattttgatcccataattaataaaactcatgtttt 45395041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 32693851 - 32693895
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaac 215  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  32693851 ctaattaattttaagttttcattttggtcccacaattaataaaac 32693895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 28909700 - 28909642
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||| ||||||| ||||    
T  28909700 ctaattaattttcagttttcattttggtcccataactaataaaactcatgttttggtcc 28909642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 37735332 - 37735385
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||||    
T  37735332 taattttaagttttcattttggtcccataattaataaaacgtatgttttagtcc 37735385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 20288320 - 20288269
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgt 221  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||    
T  20288320 cctaattaatttttagttttcattttgatcccataattaataaaactcatgt 20288269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 42684896 - 42684955
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||| ||||||| ||||| ||||||||||||||||| ||||||||| | ||||| ||||    
T  42684896 cctaaataattttaagttttcattttggttccataatgaataaaactgacgttttagtcc 42684955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 3208505 - 3208558
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||| || ||| ||||||||| |||||||||||||||| || |||||    
T  3208505 ctaattaatttccatttttcattttggtcccataattaataaaacgtacgtttt 3208558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 30535761 - 30535720
Alignment:
Q  174 attaattttcagtttacattttggttccataattaataaaac 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  30535761 attaattttcagttttcattttggttccataattaataaaac 30535720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 15746862 - 15746803
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||| || ||| ||||||||| |||||| |||||||||| ||||||| ||||    
T  15746862 cctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtcc 15746803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 42245981 - 42245924
Alignment:
Q  172 taattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||  |||||  |||||||||||||||||||||||||| || |||| ||||    
T  42245981 taattaatttcaagtttttattttggttccataattaataaaactcatcttttggtcc 42245924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 5859195 - 5859238
Alignment:
Q  28 tgctcatggaatgggactcatctctgatgaactatatgcggtaa 71  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  5859195 tgctcatggaatgggactcatatctgatgaactatatgaggtaa 5859238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 30749389 - 30749330
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||| |||||| |||||| || ||||||||||||||||| ||||||| ||||    
T  30749389 cctaattaatttccagttttcattttagtcccataattaataaaactcatgttttggtcc 30749330  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 34512834 - 34512888
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    |||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||    
T  34512834 cctaattaattaccagttttcattttggtcccataattaataaaactcatgtttt 34512888  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 35061291 - 35061337
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaact 216  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  35061291 cctaattaattttcagttttcattttggtcccataactaataaaact 35061337  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 2277559 - 2277506
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||| |||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  2277559 taatttccagttttcattttggtcccataagtaataaaacttatgttttggtcc 2277506  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 34147162 - 34147215
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||||| ||||||||| |||||| |||||||||| ||||||| ||||    
T  34147162 taattttcagttttcattttggtcccataagtaataaaactcatgttttggtcc 34147215  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 34148450 - 34148397
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||||| |||||| ||||||||| |||||||||| ||||||| ||||    
T  34148450 taattttcagttttcattttagttccataaataataaaactcatgttttggtcc 34148397  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 34513649 - 34513596
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgttt 223  Q
    |||||||||||  || ||| ||||||||||||||||||||||||||| ||||||    
T  34513649 cctaattaattaccaattttcattttggttccataattaataaaactcatgttt 34513596  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 34463988 - 34464060
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtccatcctgtttgcct 242  Q
    |||||||||||  |||||| ||||||||||  ||||||||||||||  || |||| |||||||  ||||||||    
T  34463988 cctaattaattaccagttttcattttggtttgataattaataaaacaaatcttttggtccatcaggtttgcct 34464060  T

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Target: scaffold2071 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 776 - 718
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||| |||||| ||||||||| |||||| |||||||||| ||||||| ||||    
T  776 ctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtcc 718  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 1009204 - 1009258
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||||  ||||| |||||||||||||||| |||||||||| |||||||    
T  1009204 cctaattaatttcaagttttcattttggttccataactaataaaactcatgtttt 1009258  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 30857821 - 30857879
Alignment:
Q  171 ctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    |||||||||||| ||||| ||||||||| ||| |||||||||||| |||||||| ||||    
T  30857821 ctaattaattttaagttttcattttggtcccacaattaataaaacgtatgttttggtcc 30857879  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 32759138 - 32759085
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||||| |||||| ||||||||| |||||||||| ||||||| ||||    
T  32759138 taattttcagttttcattttagttccataaataataaaactcatgttttggtcc 32759085  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 8523842 - 8523788
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||||  ||||| ||||||||| |||||| |||||||||| |||||||    
T  8523842 cctaattaatttcaagttttcattttggtcccataactaataaaactcatgtttt 8523788  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 18838 - 18891
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||| ||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  18838 taattttaagttttcattttggtcccatatttaataaaacttatgttttagtcc 18891  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 127453 - 127525
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtccatcctgtttgcct 242  Q
    ||||||||||||  ||||| | ||||||| |||||| |||||||||| ||||||| |||| || |||||||||    
T  127453 cctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccctcatgtttgcct 127525  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 46201157 - 46201205
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    ||||||||||||| ||||||||| |||||| |||||||||| |||||||    
T  46201157 taattttcagttttcattttggtcccataagtaataaaactcatgtttt 46201205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 47060571 - 47060512
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||||| || ||||| ||||    
T  47060571 cctaattaattttaagttttcattttggtcctataattaataaaacgtacgttttggtcc 47060512  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 7310302 - 7310349
Alignment:
Q  176 taattttcagtttacattttggttccataattaataaaacttatgttt 223  Q
    ||||||| ||||| ||||||||| |||||||||||||||| |||||||    
T  7310302 taattttaagttttcattttggtcccataattaataaaacgtatgttt 7310349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 17593604 - 17593660
Alignment:
Q  173 aattaattttcagtttacattttggttccataattaataaaacttatgtttttgtcc 229  Q
    ||||||||| ||| || |||||||||||| |||||||||||| ||| ||||| ||||    
T  17593604 aattaatttgcaggtttcattttggttccctaattaataaaagttacgttttagtcc 17593660  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 108533 - 108587
Alignment:
Q  170 cctaattaattttcagtttacattttggttccataattaataaaacttatgtttt 224  Q
    |||||||||||| || ||||||||||| | |||||||||||||||| || |||||    
T  108533 cctaattaatttccattttacattttgatcccataattaataaaacgtacgtttt 108587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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