View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4720_low_7 (Length: 241)
Name: NF4720_low_7
Description: NF4720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4720_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7052940 - 7052746
Alignment:
| Q |
1 |
ttcagaaatccttctttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtctgttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||| |
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| T |
7052940 |
ttcagaaatccttctttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaataaattgaaaaatatcaatatgttttc |
7052841 |
T |
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| Q |
101 |
ttcttcttaaccgtccagttcttagggaatgaggaccctggtaatccggacagtccctttaatatgctaaatgttttgctgcgcttattgtcaaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7052840 |
ttcttcttaaccgtccagttcttagggaatgaggaccctggtaacccggacagtccctttaatatgctaaacgttttgctgcgcttattgtcaaa |
7052746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7039574 - 7039380
Alignment:
| Q |
1 |
ttcagaaatccttctttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtctgttttc |
100 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7039574 |
ttcagaaatccatctttgcaaacctggagatttatcaatggtaggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtctgttttc |
7039475 |
T |
|
| Q |
101 |
ttcttcttaaccgtccagttcttagggaatgaggaccctggtaatccggacagtccctttaatatgctaaatgttttgctgcgcttattgtcaaa |
195 |
Q |
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|| ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
7039474 |
ttgttcttaaccgtccggttcttacgggatggggaccctggtaatccggacagtccctttaatatgctaaaccttttgctttgcttattatcaaa |
7039380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 7027105 - 7026928
Alignment:
| Q |
16 |
ttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtc--tgttttcttcttcttaaccg |
113 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7027105 |
ttggaaacctggagatttatcaatggctggagacctttttcatttcctgttaaccaaagaaatggaaaaatatcagtccaatttttcttcttcttaacca |
7027006 |
T |
|
| Q |
114 |
tccagttcttagggaatgaggaccctggtaatccggacagtccctttaatatgctaaatgttttgctgcgcttattgtc |
192 |
Q |
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||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7027005 |
tccggttctt-ggggatggggaccctggtaatccggacagtccctttaatatgctaaacgttttgctttgcttattgtc |
7026928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 7046893 - 7046711
Alignment:
| Q |
16 |
ttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaat-atcagtctgtttt--cttcttcttaacc |
112 |
Q |
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|
|||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
7046893 |
ttggaaacctggagatttatcaatggttggtgaccttcttcatttcctgttaatcaaacaaatggaaaaattatcagtccgttttttcttcttcttaacc |
7046794 |
T |
|
| Q |
113 |
gtccagttcttagggaatgaggaccctggtaatccggacagtccctttaatatgctaaatgttttgctgcgcttattgtcaaa |
195 |
Q |
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|||| |||||||||| || |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
7046793 |
gtccggttcttagggggtgcggaccctggtaatccggacagttcctttaatatgctaaaagttttgctttgcttattgtcaaa |
7046711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 7004281 - 7004099
Alignment:
| Q |
16 |
ttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaa-tatcagtc--tgttttcttcttcttaacc |
112 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||| |||||||| | ||||||||||||||||| |
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| T |
7004281 |
ttggaaacctggagatttatcaatggttggtgacctttttcatttcctgttgatcaaacaaatggaaaaattatcagtcagttttttcttcttcttaacc |
7004182 |
T |
|
| Q |
113 |
gtccagttcttagggaatgaggaccctggtaatccggacagtccctttaatatgctaaatgttttgctgcgcttattgtcaaa |
195 |
Q |
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|||| |||||||| ||| ||| |||||||||||||| | |||||||||||||||||| ||||||| ||||||||||||| |
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| T |
7004181 |
gtccgactcttaggggatggggaacctggtaatccggaaaatccctttaatatgctaaactttttgctttgcttattgtcaaa |
7004099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7020255 - 7020171
Alignment:
| Q |
1 |
ttcagaaatccttctttggaaacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaa |
85 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
7020255 |
ttcagaaatccttctttggaaacctggagatttatcaatggttggagtcctttttcatttcctgctaatcaaataaattgaaaaa |
7020171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 6994362 - 6994284
Alignment:
| Q |
21 |
aacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtctgtttt |
99 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| |
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| T |
6994362 |
aaccttgagatttatcaatggttggagacctttttcatttcctgttaatcaaacaaatggaaaaatatcaatcggtttt |
6994284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 7013797 - 7013725
Alignment:
| Q |
21 |
aacctggagatttatcaatggttggagtcctttttcatttcctgttaatcaaagaaatggaaaaatatcagtc |
93 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
7013797 |
aaccttgagatttatcaatggttggagacctttttcatttcctgttaatcaaagaaaaggaaaaatttcagtc |
7013725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 5865505 - 5865464
Alignment:
| Q |
22 |
acctggagatttatcaatggttggagtcctttttcatttcct |
63 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
5865505 |
acctggagatttatccatggttggactcctttttcatttcct |
5865464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5858848 - 5858806
Alignment:
| Q |
21 |
aacctggagatttatcaatggttggagtcctttttcatttcct |
63 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5858848 |
aacctggagatttatccatggttggacccctttttcatttcct |
5858806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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