View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4721-Insertion-1 (Length: 820)

Name: NF4721-Insertion-1
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4721-Insertion-1
NF4721-Insertion-1
[»] chr4 (2 HSPs)
chr4 (320-820)||(340965-341475)
chr4 (7-274)||(340652-340923)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 320 - 820
Target Start/End: Original strand, 340965 - 341475
Alignment:
Q  320 aagaaccaacatcaaaatgattggtagacatcttaaaagtcaatttcaatccaaattttcaacctagaaagaagctcggtgatctctgaaaattccccca 419  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  340965 aagaaccaacatcaaaatgattggtagacatcttgaaagtcaatttcaatccaaattttcaacctagaaagaagctcagtgatctctgaaaattccccca 341064  T
Q  420 cacaaagcatgccgaggttcaccttctgttgagccatcaatgttcaccttcacccaac------tcatcacaggggagatttcgagaaaatcctcctaat 513  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||| ||||||||||      | ||||| |||||  |||||||||||   || | ||    
T  341065 cacaaagcatgccgaggttcaccttctatcgagccattgatgttcacattcacccaacaactactgatcactgggga--tttcgagaaaactgtcttgat 341162  T
Q  514 ttcattaaaaaattttgtcgcttcggcaagattaagaagaattcaagataaacatatccttaaaaaacatcatacataaccttcatcttgggtggaatgt 613  Q
     |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  341163 ctcattaaaa--ttttgtcgcttcggcaagattaagaagaattcaagataaacatatccttaaaaaacatcatacataaccttcatctt-ggtggaatgt 341259  T
Q  614 aaagttggccta----gcattactaaaacaaagaccgttgcgagccagctaaataacatgaaaaatgtgaaccattctaacaagtaaataattttc---- 705  Q
    ||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        
T  341260 aaagttggcctagcatgcattactaaaacaaagaccgttacgagccagctaaataacatgaaaaatgtgaaccattctaacaagt-aataattttcgagt 341358  T
Q  706 -----gagtagtacaacaattaaagcatcacataaataaacaatcttaagtgaaagaagagggaaggacgactcccaacaactttatttctcaagaaaac 800  Q
         |||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  341359 cttaggagtagtacaacaatt-aagcatcacataaataaacaatcttaagcgagagaagagggaaggacgact-ccaacaactttatttctcaag-aaac 341455  T
Q  801 acattatgatgaagaatgac 820  Q
    ||||||||||||||||||||    
T  341456 acattatgatgaagaatgac 341475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 340652 - 340923
Alignment:
Q  7 aggcattccaatatgttctcctcaagtacgtgtatc---ttataaagcttgtatgttttggtttattgttttttctttaagtactttatatt-atccata 102  Q
    ||||||||||||||||| ||||||||||||||||||   ||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  340652 aggcattccaatatgttttcctcaagtacgtgtatcatcttatagagcttgtatgtttttgtttattgttttttctttaagtactttatatccatccata 340751  T
Q  103 tgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggaccttagatcctaatcctcctccctttccaacaaatagcaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  340752 tgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggatcttagatcctaatcctcctccctttccaacaaatagcaa 340851  T
Q  203 cagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  340852 cagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt 340923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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