View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-11 (Length: 309)
Name: NF4721-Insertion-11
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-11 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 2855 - 3102
Alignment:
| Q |
8 |
aaaactccattccaaatctcagtaaaagctcttataataatcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcat |
107 |
Q |
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| T |
2855 |
aaaactccattccaaatctcagtaaaagctcttataataatcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcat |
2954 |
T |
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| Q |
108 |
ctttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaagataagggtcatcagaatctttctccacagctacaccttcatt |
207 |
Q |
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| T |
2955 |
ctttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaagataagggtcatcagaatctttctccacagctactccttcatt |
3054 |
T |
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| Q |
208 |
tccagctcttccaaatcctttcaatgatgatttctctgacccgaatga |
255 |
Q |
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| T |
3055 |
tccagctcttccaaatcctttcaatgatgatttctctgacccgaatga |
3102 |
T |
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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 42945693 - 42945876
Alignment:
| Q |
9 |
aaactccattccaaatctcagtaaaagctcttataataatcccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatc |
108 |
Q |
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||||||||||||||||||||||||||||||| | ||||| |||||||| | | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42945693 |
aaactccattccaaatctcagtaaaagctctaacaataacaccatgatggtaaggtgcattcagctgaagaaaacagttcaaaagctctctaaggtcatc |
42945792 |
T |
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| Q |
109 |
tttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaagataagggtcatcagaatctttctccac |
192 |
Q |
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|||||| ||||| ||||||||||||||||| || | ||| ||||| | |||||||||||||| || ||||||||||||||||| |
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| T |
42945793 |
tttagagtatatttcattctccaatatcatttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccac |
42945876 |
T |
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