View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4721-Insertion-2 (Length: 784)

Name: NF4721-Insertion-2
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4721-Insertion-2
NF4721-Insertion-2
[»] chr6 (11 HSPs)
chr6 (515-668)||(24950258-24950411)
chr6 (380-442)||(24950150-24950212)
chr6 (361-418)||(17369690-17369747)
chr6 (361-442)||(20770652-20770733)
chr6 (544-601)||(6921508-6921565)
chr6 (374-418)||(6921350-6921394)
chr6 (374-418)||(6947880-6947924)
chr6 (378-442)||(14749399-14749463)
chr6 (157-205)||(17369699-17369747)
chr6 (157-205)||(20770685-20770733)
chr6 (542-592)||(6943110-6943160)
[»] chr7 (38 HSPs)
chr7 (489-596)||(24385052-24385159)
chr7 (489-609)||(24391252-24391372)
chr7 (361-442)||(660834-660915)
chr7 (372-442)||(29454101-29454171)
chr7 (732-784)||(24383796-24383848)
chr7 (361-437)||(24385208-24385284)
chr7 (361-439)||(14076683-14076761)
chr7 (361-439)||(14386711-14386789)
chr7 (364-442)||(19344565-19344643)
chr7 (361-442)||(29430988-29431069)
chr7 (157-205)||(660834-660882)
chr7 (361-435)||(19357919-19357993)
chr7 (372-442)||(29921991-29922061)
chr7 (361-418)||(6864794-6864851)
chr7 (552-601)||(14076550-14076599)
chr7 (552-601)||(14386578-14386627)
chr7 (362-459)||(29859439-29859536)
chr7 (361-438)||(29874517-29874594)
chr7 (157-205)||(14076713-14076761)
chr7 (157-205)||(14386741-14386789)
chr7 (355-418)||(18514768-18514831)
chr7 (375-438)||(19604464-19604527)
chr7 (361-412)||(20058044-20058095)
chr7 (383-438)||(20414888-20414943)
chr7 (375-442)||(29106816-29106883)
chr7 (374-420)||(15571895-15571941)
chr7 (376-442)||(19722020-19722086)
chr7 (372-442)||(21210479-21210549)
chr7 (376-442)||(22028630-22028696)
chr7 (361-427)||(29881273-29881339)
chr7 (376-442)||(29899376-29899442)
chr7 (363-408)||(24002235-24002280)
chr7 (159-204)||(24002235-24002280)
chr7 (363-408)||(24010419-24010464)
chr7 (159-204)||(24010419-24010464)
chr7 (732-777)||(24391081-24391126)
chr7 (377-442)||(24391416-24391481)
chr7 (361-438)||(29867242-29867319)
[»] chr4 (13 HSPs)
chr4 (365-442)||(53774842-53774919)
chr4 (372-438)||(3565750-3565816)
chr4 (161-205)||(53774875-53774919)
chr4 (372-442)||(837778-837848)
chr4 (372-418)||(3557752-3557798)
chr4 (372-418)||(3560956-3561002)
chr4 (361-442)||(11970969-11971050)
chr4 (379-442)||(35767020-35767083)
chr4 (362-438)||(53790559-53790635)
chr4 (168-205)||(3557761-3557798)
chr4 (168-205)||(3560956-3560993)
chr4 (168-205)||(3565779-3565816)
chr4 (157-206)||(11970969-11971018)
[»] chr2 (7 HSPs)
chr2 (363-442)||(18908798-18908877)
chr2 (363-442)||(18913546-18913625)
chr2 (363-442)||(18920754-18920833)
chr2 (361-441)||(14514903-14514983)
chr2 (373-442)||(25377076-25377145)
chr2 (392-442)||(10205462-10205512)
chr2 (543-601)||(20712690-20712748)
[»] chr3 (2 HSPs)
chr3 (362-438)||(3625740-3625816)
chr3 (158-205)||(3625769-3625816)
[»] chr1 (6 HSPs)
chr1 (375-441)||(4014966-4015032)
chr1 (374-442)||(4570929-4570997)
chr1 (372-438)||(39379059-39379125)
chr1 (361-442)||(4366482-4366563)
chr1 (375-442)||(21855384-21855451)
chr1 (364-442)||(10218987-10219065)
[»] chr5 (3 HSPs)
chr5 (361-442)||(28763892-28763973)
chr5 (375-442)||(24330900-24330967)
chr5 (376-455)||(29597554-29597633)
[»] scaffold0097 (1 HSPs)
scaffold0097 (543-601)||(16529-16587)
[»] chr8 (1 HSPs)
chr8 (362-412)||(27618523-27618573)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 515 - 668
Target Start/End: Original strand, 24950258 - 24950411
Alignment:
Q  515 ctcaaccaacaacttttcaccagaaccttgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaaattctcaagggta 614  Q
    |||||||||||||  ||||  ||||||| ||||||||||||||||| |||||||||| |||| | ||||||| ||||||||||||||||||||||  |||    
T  24950258 ctcaaccaacaacccttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaaattctcaacagta 24950357  T
Q  615 tagttattacactcatatgtaatatcctttcgaatgaccaaccagttaatagtt 668  Q
    |  ||||| || |||||||||||||| ||||||||||||||||| |||| ||||    
T  24950358 tgattattccaatcatatgtaatatcatttcgaatgaccaaccaattaagagtt 24950411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 24950150 - 24950212
Alignment:
Q  380 aattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaa 24950212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 17369747 - 17369690
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| |||||    
T  17369747 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaa 17369690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 442
Target Start/End: Complemental strand, 20770733 - 20770652
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||| | |||||||||||||||||||||||| |||| ||||||||||  ||||| | | |||| | ||||||||||||    
T  20770733 tttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaa 20770652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 6921508 - 6921565
Alignment:
Q  544 gagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaa 601  Q
    ||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||| ||||    
T  6921508 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaa 6921565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 6921350 - 6921394
Alignment:
Q  374 ataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  6921350 ataactaattttaaggaattgagtccaagattcttcaactccaaa 6921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 6947880 - 6947924
Alignment:
Q  374 ataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaa 6947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 14749463 - 14749399
Alignment:
Q  378 ctaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||| ||||||||| |||||||||||| ||| ||||| | ||||||| |||||| ||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaa 14749399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 17369747 - 17369699
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  17369747 tttgaagattctgataactaattttaagaaattgagtccaagagtcttc 17369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 20770733 - 20770685
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||||||| | |||||||||||||||||||||||| |||| ||||||||    
T  20770733 tttgaagattatgataactaattttaaggaattgaatccatgactcttc 20770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 6943110 - 6943160
Alignment:
Q  542 ttgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcgagat 592  Q
    ||||||| ||||||||| ||| |||||||| |||||||||||||| |||||    
T  6943110 ttgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagat 6943160  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 596
Target Start/End: Complemental strand, 24385159 - 24385052
Alignment:
Q  489 caattcataagcacacaaatagttggctcaaccaacaacttttcaccagaaccttgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcg 588  Q
    |||| |||||||||||||| | |||  |||  |||||||  |||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||| |    
T  24385159 caatccataagcacacaaagacttgtttcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtg 24385060  T
Q  589 agatgatc 596  Q
    ||||||||    
T  24385059 agatgatc 24385052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 609
Target Start/End: Complemental strand, 24391372 - 24391252
Alignment:
Q  489 caattcataagcacacaaatagttggctcaaccaacaacttttcaccagaaccttgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcg 588  Q
    |||| ||| ||||||||||| |||| ||||  |||||||  |||||  ||| ||  |||||||||||||||||||||||||||  ||||||||||||| |    
T  24391372 caatccatgagcacacaaatggttgactcattcaacaacacttcacgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaatcaagtg 24391273  T
Q  589 agatgatcgcaaaattctcaa 609  Q
    ||||||||||| ||| |||||    
T  24391272 agatgatcgcataatgctcaa 24391252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 660834 - 660915
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||||| | ||| | | |||||| ||||||||||||    
T  660834 tttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaa 660915  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 29454101 - 29454171
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||||||||||| ||||||| ||||||| |||||||| ||||| |||||||||  ||||||||||||    
T  29454101 tgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaa 29454171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 732 - 784
Target Start/End: Complemental strand, 24383848 - 24383796
Alignment:
Q  732 ggaaaacttggaacacttctccatatattatcacccaaactaaaaatccttgc 784  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  24383848 ggaaaacttggaatacttttccaaatattatcacccaaactaaaaatccttgc 24383796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 24385284 - 24385208
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatata 437  Q
    |||||||| | |||| |||||||||||| ||| |||||||||||| |||||| ||||| ||| ||||||||||||||    
T  24385284 tttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 24385208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 439
Target Start/End: Complemental strand, 14076761 - 14076683
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataac 439  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| ||||| | | |||| | |||||||||    
T  14076761 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataac 14076683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 439
Target Start/End: Complemental strand, 14386789 - 14386711
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataac 439  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| ||||| | | |||| | |||||||||    
T  14386789 tttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataac 14386711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 442
Target Start/End: Original strand, 19344565 - 19344643
Alignment:
Q  364 gaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||| ||||| ||||||||||||| |||||| ||||||| | |||||| ||||| | |||||||| ||||||||||||    
T  19344565 gaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaa 19344643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 29430988 - 29431069
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||||  ||||||||||||||||||||||||  ||||||| |||| | | ||||| |||||||||  ||||||||||||    
T  29430988 tttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaa 29431069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 660834 - 660882
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  660834 tttgaagattatgataactaattttaaggaattgagtccaagactcttc 660882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 19357993 - 19357919
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccata 435  Q
    ||||||||  |||| |||||||||| | ||||||| |||||||||||| ||| ||||| | ||||||||||||||    
T  19357993 tttgaagatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccata 19357919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 29921991 - 29922061
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||||||| |||||||||||  |||||| |||||| | ||||| ||| |||||| ||||||||||||    
T  29921991 tgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaa 29922061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 6864794 - 6864851
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    |||||||| | ||||||||| |||||||||| ||| |||||||||||||||| |||||    
T  6864794 tttgaagattatgataactagttttaaggaactgagtccaagactcttcaactccaaa 6864851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 14076599 - 14076550
Alignment:
Q  552 aacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaa 601  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||    
T  14076599 aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaa 14076550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 14386627 - 14386578
Alignment:
Q  552 aacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaa 601  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||    
T  14386627 aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaa 14386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 29859536 - 29859439
Alignment:
Q  362 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaactgatcttccttgtaac 459  Q
    ||||||| | ||||||||||||||||| ||| |  ||||||| |||||||| ||||| ||| |||||| ||||||||| || | |  |||||||||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaac 29859439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 29874594 - 29874517
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    |||||||| | ||||||||||||||||| ||| || ||||||| |||||||| ||||| ||| |||| | ||||||||    
T  29874594 tttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 14076761 - 14076713
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  14076761 tttgaagattctgataactaattttaagaaattgagtccaagagtcttc 14076713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 14386789 - 14386741
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  14386789 tttgaagattctgataactaattttaagaaattgagtccaagagtcttc 14386741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 18514768 - 18514831
Alignment:
Q  355 aatttctttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    ||||| |||||||| ||  |||||||||||||||||||||| ||||||| | |||||| |||||    
T  18514768 aatttatttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaa 18514831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 19604464 - 19604527
Alignment:
Q  375 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    ||||||||||||||||||||| |||| || |||||||| ||||| | | |||||| ||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataa 19604527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 20058044 - 20058095
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaac 412  Q
    |||||||| | | ||||||||||||||| ||||||| |||||||||||||||    
T  20058044 tttgaagattttcataactaattttaagaaattgacaccaagactcttcaac 20058095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 20414943 - 20414888
Alignment:
Q  383 tttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    ||||||||||||| |||||||||  ||| | ||||| |||||||||||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataa 20414888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 29106883 - 29106816
Alignment:
Q  375 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||||||||  | |||| |||||||||||||||| ||||| ||| |||||| ||||| ||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaa 29106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 15571895 - 15571941
Alignment:
Q  374 ataactaattttaaggaattgactccaagactcttcaacaccaaact 420  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  15571895 ataactaattttatggaattgaacccaagactcttcaactccaaact 15571941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 19722086 - 19722020
Alignment:
Q  376 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||| ||||| ||||||||| ||||||| |||| ||| ||||| | |||||||||||||| ||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaa 19722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 21210479 - 21210549
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||| |||| |||||||||| || |||||||||  ||| | ||||||||  |||||||||||||||||||    
T  21210479 tgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaa 21210549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 22028696 - 22028630
Alignment:
Q  376 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||| ||||| |||||| |||||||||||||||| ||| | | | |||| ||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaa 22028630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 29881339 - 29881273
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcat 427  Q
    |||||||| | || ||||||||| ||||||||||| ||||||| |||||||| ||||| ||| ||||    
T  29881339 tttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcat 29881273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 29899442 - 29899376
Alignment:
Q  376 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||||| |  |||||| |||| ||||||||||| ||||| ||| |||||| ||||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaa 29899376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 24002280 - 24002235
Alignment:
Q  363 tgaagagtctgataactaattttaaggaattgactccaagactctt 408  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24002280 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 24002280 - 24002235
Alignment:
Q  159 tgaagagtctgataactaattttaaggaattgactccaagactctt 204  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24002280 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 24010464 - 24010419
Alignment:
Q  363 tgaagagtctgataactaattttaaggaattgactccaagactctt 408  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24010419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 24010464 - 24010419
Alignment:
Q  159 tgaagagtctgataactaattttaaggaattgactccaagactctt 204  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24010419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 777
Target Start/End: Complemental strand, 24391126 - 24391081
Alignment:
Q  732 ggaaaacttggaacacttctccatatattatcacccaaactaaaaa 777  Q
    ||||||||| ||| | ||||||| ||||||||||||||||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaa 24391081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 24391481 - 24391416
Alignment:
Q  377 actaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||| ||||| |||||||||||| | | |||||| ||||| ||| |||||||||||| ||||||    
T  24391481 actaatgttaagaaattgactccaacatttttcaactccaaagttcttcatcttccataaaacaaa 24391416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 29867319 - 29867242
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    |||||||| | || ||||||||| ||||||||||| ||||||| |||||||| || || ||| |||| | ||||||||    
T  29867319 tttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataa 29867242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 365 - 442
Target Start/End: Complemental strand, 53774919 - 53774842
Alignment:
Q  365 aagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| ||||| | | |||| | ||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaa 53774842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 3565816 - 3565750
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  3565816 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 3565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 53774919 - 53774875
Alignment:
Q  161 aagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttc 53774875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 837848 - 837778
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||| ||||||||||  |||||| |||||||||||| ||||||||| ||| |||| | ||||||||||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaa 837778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 3557798 - 3557752
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||    
T  3557798 tgataactaattttaagaaattgagtccaagactcttcaaccccaaa 3557752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 3560956 - 3561002
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaa 418  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||    
T  3560956 tgataactaattttaagaaattgagtccaagactcttcaaccccaaa 3561002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 11970969 - 11971050
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||| | |||||||||||| |||| |||||| ||||||||||||| || ||||| | | |||| | ||||||||||||    
T  11970969 tttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaa 11971050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 35767083 - 35767020
Alignment:
Q  379 taattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaaa 442  Q
    |||||||||||| |||| |||||||||||||||| ||||| ||| | ||||||||||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaa-ttcttccatcttccatataacaaa 35767020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 53790635 - 53790559
Alignment:
Q  362 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    ||||||| ||||| ||||||||||||| |||||| ||||||| | |||||  ||||| ||  |||||||||||||||    
T  53790635 ttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataa 53790559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 3557798 - 3557761
Alignment:
Q  168 tgataactaattttaaggaattgactccaagactcttc 205  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  3557798 tgataactaattttaagaaattgagtccaagactcttc 3557761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 3560956 - 3560993
Alignment:
Q  168 tgataactaattttaaggaattgactccaagactcttc 205  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  3560956 tgataactaattttaagaaattgagtccaagactcttc 3560993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 3565816 - 3565779
Alignment:
Q  168 tgataactaattttaaggaattgactccaagactcttc 205  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  3565816 tgataactaattttaagaaattgagtccaagactcttc 3565779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 11970969 - 11971018
Alignment:
Q  157 tttgaagagtctgataactaattttaaggaattgactccaagactcttcc 206  Q
    |||||||| | |||||||||||| |||| |||||| ||||||||||||||    
T  11970969 tttgaagattatgataactaattctaagaaattgagtccaagactcttcc 11971018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 18908798 - 18908877
Alignment:
Q  363 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18908798 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18908877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 18913546 - 18913625
Alignment:
Q  363 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18913546 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18913625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 18920754 - 18920833
Alignment:
Q  363 tgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||    
T  18920754 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaa 18920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 14514983 - 14514903
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcat-catcttccatataacaa 441  Q
    |||||||| ||  |||||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||| |||||||||||||    
T  14514983 tttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaa-ttcatccattttccatataacaa 14514903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 25377145 - 25377076
Alignment:
Q  373 gataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||||||||||  |||||| |||||||||||| ||| ||||| | | ||||| |||||||||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaa 25377076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 10205462 - 10205512
Alignment:
Q  392 ttgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||| |||||||||||||||||||| |||   |||||||||||||||||||    
T  10205462 ttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaa 10205512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 20712690 - 20712748
Alignment:
Q  543 tgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaa 601  Q
    |||||| |||||| |||||||||||||||  |||||||||| || ||||||||| ||||    
T  20712690 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaa 20712748  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 3625816 - 3625740
Alignment:
Q  362 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    ||||||| | ||||||||||||||||| |||||| |||||||||||||||| ||||| ||| |||| | ||||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 3625816 - 3625769
Alignment:
Q  158 ttgaagagtctgataactaattttaaggaattgactccaagactcttc 205  Q
    ||||||| | ||||||||||||||||| |||||| |||||||||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaagactcttc 3625769  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  375 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaa 441  Q
    ||||||| ||||||||||||| ||||||| |||||||| ||||| ||| |||||| |||||||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 4570997 - 4570929
Alignment:
Q  374 ataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||||||||||| |||||| ||||||| |||||||| ||||| ||| |||| | ||||||||||||    
T  4570997 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 4570929  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 39379059 - 39379125
Alignment:
Q  372 tgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataa 438  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||||| | | |||||| ||||||||    
T  39379059 tgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataa 39379125  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 4366482 - 4366563
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    |||||||| |||| ||||||| |||||| ||| || |||||||||||||||| || || ||| |||||| ||||| ||||||    
T  4366482 tttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaa 4366563  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 21855384 - 21855451
Alignment:
Q  375 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||| |||||||| |||| ||||||| |||||||| ||||| | | |||||| ||||||||||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaa 21855451  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 442
Target Start/End: Complemental strand, 10219065 - 10218987
Alignment:
Q  364 gaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||| || |||||||||||||| |||||| ||||||| |||||||  ||||| ||| |||| | ||||| ||||||    
T  10219065 gaagagtatggtaactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaa 10218987  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 28763892 - 28763973
Alignment:
Q  361 tttgaagagtctgataactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||||  |||||| || ||||| |||||| |||||||||||| |||||| ||||| | | |||||||||||||||||||    
T  28763892 tttgaagatcctgatagctgattttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaa 28763973  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 24330900 - 24330967
Alignment:
Q  375 taactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaa 442  Q
    ||||||| |||||||| |||| ||||||| |||||||| ||||| | | |||||| ||||||||||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaa 24330967  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 455
Target Start/End: Original strand, 29597554 - 29597633
Alignment:
Q  376 aactaattttaaggaattgactccaagactcttcaacaccaaacttcatcatcttccatataacaaactgatcttccttg 455  Q
    |||||||||||||||||||| ||||||| | |||||| ||||| |  ||||| | |||||||||||| |||  |||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttg 29597633  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 16529 - 16587
Alignment:
Q  543 tgagggggcaacaattgtgtgtatgtctcagtccccaaatcaagcgagatgatcgcaaa 601  Q
    |||||| |||||| |||||||||||||||  |||||||||| || ||||||||| ||||    
T  16529 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaa 16587  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 27618573 - 27618523
Alignment:
Q  362 ttgaagagtctgataactaattttaaggaattgactccaagactcttcaac 412  Q
    ||||||| |||||||||||| |||||| || ||| ||||||||||||||||    
T  27618573 ttgaagattctgataactaactttaagcaactgagtccaagactcttcaac 27618523  T

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