View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-3 (Length: 752)
Name: NF4721-Insertion-3
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 197 - 752
Target Start/End: Complemental strand, 5146661 - 5146109
Alignment:
| Q |
197 |
gattaaggaatttgactcaattaactacatcatagataggcatgaattgcataaactaactctaccaagatctacactgaagttataattgcacttatgg |
296 |
Q |
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| T |
5146661 |
gattaaggaatttgactcaattaactacatcatag----gcatgaattgcataaactaactctaccaagatctacactgaagttataattgcacttatgg |
5146566 |
T |
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| Q |
297 |
acaacaatt-aaaacaatgatctacattgagaacaatgaacatgtaacaagaaaggttgaatagtcaactcttttcaagcaagtcttcttcattcnnnnn |
395 |
Q |
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| T |
5146565 |
acaacaatttaaaacaatgatctacattgtgaacaatgaacatgtaacaagaaaggttgaatagtcaactcttttcaagcaagtcttcttcattcaaaaa |
5146466 |
T |
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| Q |
396 |
nntatacaagtattcacatttcacacaaccaaaattctaatcctaaccaacaaaaatgcaaacatgaagaaacaaaaataagagagtgatctgaattctg |
495 |
Q |
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| T |
5146465 |
aatatacaagtattcacatttcacacaaccaaaattctaatcctaaccaacaaaaatgcaaacatgaagaaacaaaaataagagagtgatctgaattctg |
5146366 |
T |
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| Q |
496 |
aacagcatacaatgatcaccaacttttcttgtgtgaatgttttgcttgaatcttgttcttggaagcatcatcatcataatcaccaccacttcttggagaa |
595 |
Q |
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| T |
5146365 |
aacagcatacaatgatcaccaacttttcttgtgtgaatgttttgcttgaatcttgttcttggaagcatcatcatcataatcaccaccacttcttggagaa |
5146266 |
T |
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| Q |
596 |
actaatccttcattattagtaaccattttcttctcactccatcttctaacataatctttcttcttgttaatcccttcattaatcaccatcttcttttcac |
695 |
Q |
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| T |
5146265 |
actaatccttcattattagtaaccattttcttctcactccatcttctaacataatctttctttttgttaatcccttcattaaccaccatcttcttttcac |
5146166 |
T |
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| Q |
696 |
taaaccctctaacataatcttttttctttaccgctccttcattattcatcacatcca |
752 |
Q |
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| T |
5146165 |
taaaccctctaacataatcttttttctttaccactccttcattattcatcacatcca |
5146109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 5146801 - 5146661
Alignment:
| Q |
8 |
tcacattctttgaatgtaataatgattctaaaatagaagtggtatagaactaacttgttgacataaactgcacaaaactgtacatcttggaattcttggt |
107 |
Q |
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| T |
5146801 |
tcacattctttgaatgtaataatgattctaaaatagaagtggtatagaactaacttgttgacataaactgcacaaaactttaca---------tcttggt |
5146711 |
T |
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| Q |
108 |
ctatttcttttaaatgtcatcatattgctacacttaatgaaatttaactg |
157 |
Q |
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| T |
5146710 |
ctatttcttttaaatgtcatcatattgctacacttaatgaaatttaactg |
5146661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 269 - 597
Target Start/End: Complemental strand, 5389413 - 5389102
Alignment:
| Q |
269 |
tacactgaagttataattgcacttatggacaacaatta-aaacaatgatctacattgagaacaatgaacatgtaacaagaaaggttgaatagtcaactct |
367 |
Q |
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|||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
5389413 |
tacattgaagttataattgcacttgtggacaacaatttgaaacaatgatctacattgagaacactgatcatgtaacaagaaaggttgaatagtcaactct |
5389314 |
T |
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| Q |
368 |
tttcaagcaagtcttcttcattcnnnnnnntatacaagtattcacatttcacacaaccaaaattctaatcctaaccaacaaaaatgcaaacatgaagaaa |
467 |
Q |
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| T |
5389313 |
tttcaagcaagtc-------ttcaaaaaaatatacaagtattcacatttcacacaaccgaaattc-aaacatgaaaaagaaaaagaaaaagaagaagaaa |
5389222 |
T |
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| Q |
468 |
caaaaataagagagtgatctgaattctgaacagcatacaatgatcaccaacttttcttgtgtgaatgttttgcttgaatcttgttcttggaagcatcatc |
567 |
Q |
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| T |
5389221 |
caaaaataagggagtga-------tctgaacagcattcaatgatcaccaatttttcttgtgtgaatgttttgtttgaatcttgttcttggaag---cttc |
5389132 |
T |
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| Q |
568 |
atcataatcaccaccacttcttggagaaac |
597 |
Q |
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| T |
5389131 |
atcatattcaccaccacttcttggagaaac |
5389102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 5389619 - 5389554
Alignment:
| Q |
25 |
aataatgattctaaaatagaagtggtatag-aactaacttgttgacataaactgcacaaaactgta |
89 |
Q |
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| T |
5389619 |
aataatgattctaaaatagaagtggtataggaactaagttgttgacataaactgcacaaaactgta |
5389554 |
T |
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Back To:
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