View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-4 (Length: 632)
Name: NF4721-Insertion-4
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 12541123 - 12541364
Alignment:
| Q |
11 |
cctgcctgtagaatattgtagattacatgcttatgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctatatctttgcttc |
110 |
Q |
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| T |
12541123 |
cctgccggtggaatattgtagattacatgc------tttctagttttttaatttaaggaccatgcttctgcttttactttcacttctacatctttgcttc |
12541216 |
T |
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| Q |
111 |
caagtgtgtgcactgcaaaataataatgttcaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctctttgattatggcttatgat |
210 |
Q |
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| T |
12541217 |
caagtgtgtgcactgcaaaataataatgcttaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctctttgattatgccttatcat |
12541316 |
T |
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| Q |
211 |
tgtcttgccttgtgacattttctttggatggatcttactcttatgatt |
258 |
Q |
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| T |
12541317 |
tgtcttgccttgtgacattttctttggatggatcttactcttatgatt |
12541364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 12541275 - 12541359
Alignment:
| Q |
463 |
tgtttcttgttttatattttctctttgattataccttgtcattgtcttgccttgtgacgttaacttcggatggatcttactctta |
547 |
Q |
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| T |
12541275 |
tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta |
12541359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 12541367 - 12541453
Alignment:
| Q |
302 |
gtaatagaccatacaatataggattgagtttctcatattcatgtttttggctctgatcaaataagtttcctcccatattataaacctag |
390 |
Q |
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| T |
12541367 |
gtaatagaccatacaatctaggattgagtttctcat--tcatgtttttggctatgatcaaataagtttccaacagtattataaacctag |
12541453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 12535075 - 12534982
Alignment:
| Q |
44 |
tgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctatat----ctttgcttccaagtgtgtgcactgcaaaataa |
133 |
Q |
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| T |
12535075 |
tgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgcactagaaaataa |
12534982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 17729807 - 17729860
Alignment:
| Q |
353 |
tctgatcaaataagtttcctcccatattataaacctagagattgccttgaatta |
406 |
Q |
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| T |
17729807 |
tctgatcaaataagtttcatgcagcattataaacctagagattgccttgaatta |
17729860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 384192 - 384135
Alignment:
| Q |
43 |
atgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctata |
100 |
Q |
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| T |
384192 |
atgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctata |
384135 |
T |
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