View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4721-Insertion-5 (Length: 288)

Name: NF4721-Insertion-5
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4721-Insertion-5
NF4721-Insertion-5
[»] chr5 (10 HSPs)
chr5 (7-288)||(9837937-9838218)
chr5 (8-258)||(10594078-10594328)
chr5 (61-286)||(19607476-19607701)
chr5 (64-273)||(10603129-10603338)
chr5 (64-263)||(10590061-10590260)
chr5 (77-263)||(10579396-10579582)
chr5 (179-256)||(10610201-10610278)
chr5 (142-273)||(10599542-10599673)
chr5 (7-44)||(10764950-10764987)
chr5 (196-256)||(10563535-10563595)
[»] chr6 (1 HSPs)
chr6 (41-277)||(24352350-24352586)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 9838218 - 9837937
Alignment:
Q  7 agatattccacgagaaatatgtcgcctaaaaaacttgataataataacagtgactcacaacaaactatcaggtacatttccaccttgtctctacaatatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9838218 agatattccacgagaaatatgtcgcctaaaaaacttgataataataacagtgactgacaacaaactatcaggtacatttccaccttgtctctacaatatg 9838119  T
Q  107 tcatctcttacattgatctcaacagcagataatcgctttagtggctctcttccatcaaatatgttccaaactctccctaatctcaaatcttttgaaatag 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9838118 tcatctcttacattgatctcaacagcagataatcactttagtggctctcttccatcaaatatgttccaaactctccctaatctccgatcttttgaaatag 9838019  T
Q  207 gagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctactttgacatcatttgacattagtggaaacca 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838018 gagggaataaaatcttaggttcaatcccaacttccattgtaaatgcttctactttgacatcatttgacattagtggaaacca 9837937  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 10594078 - 10594328
Alignment:
Q  8 gatattccacgagaaatatgtcgcctaaaaaacttgataataataacagtgactcacaacaaactatcaggtacatttccaccttgtctctacaatatgt 107  Q
    |||||||||| |||||||||||  || |||||||||| ||||||   | || ||   ||||| ||||| ||||||||||||||||||||  ||||||||     
T  10594078 gatattccacaagaaatatgtcatcttaaaaacttgacaataatgttactgcctgtgaacaacctatctggtacatttccaccttgtcttcacaatatga 10594177  T
Q  108 catctcttacattgatctcaacagcagataatcgctttagtggctctcttccatcaaatatgttccaaactctccctaatctcaaatcttttgaaatagg 207  Q
    ||||||||||    |||||| |  |||  ||| ||||  |||||||||||||| |  | ||||||||||||||||| |||||| ||  ||||||||||||    
T  10594178 catctcttactggcatctcagccccagcaaatagcttcggtggctctcttccacccgacatgttccaaactctccccaatctccaagtttttgaaatagg 10594277  T
Q  208 agggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctac 258  Q
     |||||||| || ||||||  |||||| | |||||||| ||| ||||||||    
T  10594278 cgggaatcagatgttaggtaaaatccctatttccattgcaaacgcttctac 10594328  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 286
Target Start/End: Complemental strand, 19607701 - 19607476
Alignment:
Q  61 tcacaacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcgctttagtggctctcttcca 160  Q
    |||||||||| |||| |||||||||||  ||||||| | ||||||||||||||||||  |||| ||| | |||| ||||| ||||| ||||||||||||     
T  19607701 tcacaacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcc- 19607603  T
Q  161 tca-aatatgttccaaactctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctact 259  Q
    ||| || |||||| | |||||||  |||||  || |||| | ||| || ||||||||||| | |||| |||| || |||||||||  ||||| |||| |     
T  19607602 tcataacatgttcaatactctccgcaatcttcaaactttagcaattggtgggaatcaaatatcaggtccaatacctacttccattacaaatggttcttcc 19607503  T
Q  260 ttgacatcatttgacattagtggaaac 286  Q
    |||||||||||||  ||||||| ||||    
T  19607502 ttgacatcatttgttattagtgaaaac 19607476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 10603129 - 10603338
Alignment:
Q  64 caacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcgctttagtggctctcttccatca 163  Q
    ||||||| | || |||||||||||  ||||||| || |||||| ||||||||  | ||||||||   ||||  ||| |||||||||||||||||||| |     
T  10603129 caacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcagtgaatagctttagtggctctcttccaccc 10603228  T
Q  164 aatatgttccaaactctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctactttga 263  Q
    ||||||||||| |||||||| |||||| ||| ||||  | | |||   |||||| |||||||| ||||||| ||||| |||   ||||||||| ||||||    
T  10603229 aatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctttga 10603328  T
Q  264 catcatttga 273  Q
    ||| ||||||    
T  10603329 cattatttga 10603338  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 263
Target Start/End: Complemental strand, 10590260 - 10590061
Alignment:
Q  64 caacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcgctttagtggctctcttccatca 163  Q
    ||||||| | || ||||||||||   ||||||| || |||||||||||||||||   |||||||   ||||  ||| |||||||||||||||||||  |     
T  10590260 caacaaattgtctggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgcagcgaatagctttagtggctctcttccgccc 10590161  T
Q  164 aatatgttccaaactctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctactttga 263  Q
    ||||||||| | ||||||||||| ||| | |  | || ||| ||||| |||||| |||  ||| |||||||||||||||||| |||||||| ||||||||    
T  10590160 aatatgttcaacactctccctaacctctatttctatggaattggaggaaatcaattctctggtccaatcccaacttccattgcaaatgcttatactttga 10590061  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 10579396 - 10579582
Alignment:
Q  77 ggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcgctttagtggctctcttccatcaaatatgttccaaa 176  Q
    ||||||||||   ||||||| || |||||||||||||||||   |||||||   | ||  ||| |||||||||| ||||||||| | ||||||||| | |    
T  10579396 ggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgaagcgaatagctttagtggttctcttccacccaatatgttcaaca 10579495  T
Q  177 ctctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttctactttga 263  Q
    |||||||||| ||| | |  | || ||| ||||| |||||| |||  ||| |||||||||||||||||| |||||||| ||||||||    
T  10579496 ctctccctaacctctatttctatggaattggaggaaatcaattctctggtccaatcccaacttccattgcaaatgcttatactttga 10579582  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 10610201 - 10610278
Alignment:
Q  179 ctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttct 256  Q
    ||||||||||||||||||||||||   ||||| |||||| ||| |||| |||||||   |||||||| ||||||||||    
T  10610201 ctccctaatctcaaatcttttgaacctggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttct 10610278  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 10599542 - 10599673
Alignment:
Q  142 ctttagtggctctcttccatcaaatatgttccaaactctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttcc 241  Q
    ||||||||||||||||||| | ||||||||| | |||||||| |||||| ||| ||||    | |||   ||| || ||| |||| ||||||| |||||     
T  10599542 ctttagtggctctcttccacccaatatgttctacactctccccaatctccaatattttacggtcggatcaaataaattctcaggtccaatccctacttca 10599641  T
Q  242 attgtaaatgcttctactttgacatcatttga 273  Q
    |||  |||||||||| ||||||||| ||||||    
T  10599642 atttcaaatgcttcttctttgacattatttga 10599673  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 10764987 - 10764950
Alignment:
Q  7 agatattccacgagaaatatgtcgcctaaaaaacttga 44  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  10764987 agatattccacaagaaatatgtcgcctcaaaaacttga 10764950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 10563535 - 10563595
Alignment:
Q  196 ttttgaaataggagggaatcaaatcttaggttcaatcccaacttccattgtaaatgcttct 256  Q
    ||||||||| ||||  |||||| ||| |||| ||||||| | |||||||||||||||||||    
T  10563535 ttttgaaattggagcaaatcaattctcaggtccaatccctatttccattgtaaatgcttct 10563595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 41 - 277
Target Start/End: Original strand, 24352350 - 24352586
Alignment:
Q  41 ttgataataataacagtgactcacaacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatc 140  Q
    |||| ||||||||| ||| ||  ||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||  ||||||||||| ||||| ||||    
T  24352350 ttgaaaataataacggtggctgccaacagattatcaggtacatttccaccgtgtttctacaatatgtcgtctcttattttgatctcaactgcagagaatc 24352449  T
Q  141 gctttagtggctctcttccatcaaatatgttccaaactctccctaatctcaaatcttttgaaataggagggaatcaaatcttaggttcaatcccaacttc 240  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||| || |||||||||||||| | |||||||||||||| |||||||||||||||||    
T  24352450 gctttagcggctctcttcaatcaaatatgttccaaactcttcctaatatccaatcttttgaaatacgcgggaatcaaatctttggttcaatcccaacttc 24352549  T
Q  241 cattgtaaatgcttctactttgacatcatttgacatt 277  Q
    ||||| ||||||||||| |||||||| ||||||||||    
T  24352550 cattgaaaatgcttctattttgacattatttgacatt 24352586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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