View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-7 (Length: 225)
Name: NF4721-Insertion-7
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 25168439 - 25168226
Alignment:
| Q |
8 |
gtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaaggagatatatatgataacttattcgatttctttgtttaatt |
107 |
Q |
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| T |
25168439 |
gtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaaggagatttatatgataacttattcaatttctttgtttaatt |
25168340 |
T |
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| Q |
108 |
ataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaacaaggttaccaaagtttacaaaagagcaatctaagct |
207 |
Q |
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| T |
25168339 |
ataggtttatggatcccttggccaatggagattatccaaaaaccatgagagcattagtcagaacaaggttaccaaagtttacaaaagagcaatctaagct |
25168240 |
T |
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| Q |
208 |
agtgagtggttcat |
221 |
Q |
| |
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|||||||||||||| |
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| T |
25168239 |
agtgagtggttcat |
25168226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 25252827 - 25253040
Alignment:
| Q |
8 |
gtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaaggagatatatatgataacttattcgatttctttgtttaatt |
107 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
25252827 |
gtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaaggagatttatatgataacttattcaatttctttgtttaatt |
25252926 |
T |
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| Q |
108 |
ataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaacaaggttaccaaagtttacaaaagagcaatctaagct |
207 |
Q |
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| T |
25252927 |
ataggtttatggatcccttggccaatggagattatcctaaaaccatgagagccttagtcagatcaaggttaccaaagtttacaaaagagcaatctaagct |
25253026 |
T |
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| Q |
208 |
agtgagtggttcat |
221 |
Q |
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|||||||||||||| |
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| T |
25253027 |
agtgagtggttcat |
25253040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 25180041 - 25179891
Alignment:
| Q |
71 |
atatatatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaa |
170 |
Q |
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|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || || ||| |
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| T |
25180041 |
atatatatgataacttattccatttctatatataattataggtttatggatcccttggtcaatggagattatccaaaaaccatgagagccttggttagat |
25179942 |
T |
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| Q |
171 |
caaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
25179941 |
caaggttaccaaagtttacaaaagagcaatctaagcaagtcagtggttcat |
25179891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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