View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-8 (Length: 344)
Name: NF4721-Insertion-8
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 1156995 - 1157331
Alignment:
| Q |
8 |
atttcttttactgaacttgggtttttcattcccaaattcttgatcagatccaataacgtgtgatcgatggagtgcggcaagacaatcagatcatcagtaa |
107 |
Q |
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| T |
1156995 |
atttcttttactgaacttgtgtttttcattcccaaattcttgatcagatccaataacgtgtgattgatggagtgtggcgagacaaatagatcatcagtaa |
1157094 |
T |
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| Q |
108 |
tgatgaaagtggtagcacctttaacaaatccattgcacaactgtgctagcgaaactgaacagttcaaacgattaccacacctaccataaatccttgttgt |
207 |
Q |
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| T |
1157095 |
tgacaaaagtcgtagcacctttaacaaatccattgcacagctgtgctagggaaactgaacggttcaagcgattaccacacctaccataaatatattttgt |
1157194 |
T |
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| Q |
208 |
acctatgctcaaataagggcaatgatgaccatgatctttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctgcaa |
307 |
Q |
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| T |
1157195 |
acctatgctcaaataagggcaatgatgaccatgatctttcgaacacctgaagtaaattgtagggacagtatcatcaatattaattttgagagtgctgcaa |
1157294 |
T |
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| Q |
308 |
taatcttctgatgaattattaatcggcaacagtccaa |
344 |
Q |
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| T |
1157295 |
taatcttcggatgagttattaatcggcaacaatccaa |
1157331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 23259014 - 23259347
Alignment:
| Q |
8 |
atttcttttactgaacttgggtttttcattcccaaattcttgatcagatccaataacgtgtgatcgatggagtgcggcaagacaatcagatcatcagtaa |
107 |
Q |
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| T |
23259014 |
atttcttttactgaacttgtgtttctcatttgcaaattattgaccagaccaaacaacgtgtgatccatagagtgcggcaagacagttagatcatcagtaa |
23259113 |
T |
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| Q |
108 |
tgatgaaagtggtagcacctttaacaaatccattgcacaactgtgctagcgaaactgaacagttcaaacgattaccacacctaccataaatccttgttgt |
207 |
Q |
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| T |
23259114 |
caaaaaacatagaatcatctttaacaaatccattgcctgactgtgtcatggaaaccgaacggttcatacgattttcacacctacaataatttctttttgt |
23259213 |
T |
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| Q |
208 |
acctatgctcaaataagggcaatgatga---ccatgatctttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctg |
304 |
Q |
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| T |
23259214 |
accaatgcttaaattattacaacgattatagtcttcaaacttggaacaaatgaagtaatttttagggtcagtatcatcaatgttaattttgagactgcca |
23259313 |
T |
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| Q |
305 |
caataatcttctgatgaattattaatcggcaaca |
338 |
Q |
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| T |
23259314 |
caataatcttcagatgagttagtactcggcaaca |
23259347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 23251509 - 23251579
Alignment:
| Q |
245 |
ttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctgcaataatcttc |
315 |
Q |
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| T |
23251509 |
ttggaacatatgaagtactttgtgggctgagagtcatcaaaattaattctgagagtgcggcaataatcttc |
23251579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 23322871 - 23322919
Alignment:
| Q |
276 |
tatcatcaatattaattttgagagtgctgcaataatcttctgatgaatt |
324 |
Q |
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| T |
23322871 |
tatcatcgatgttaaatttaagagtgctgcaataatcttccgatgaatt |
23322919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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