View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721-Insertion-9 (Length: 128)
Name: NF4721-Insertion-9
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 5e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 742282 - 742403
Alignment:
| Q |
7 |
aaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcg |
106 |
Q |
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| T |
742282 |
aaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcg |
742381 |
T |
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| Q |
107 |
aaaagtagcacaatgtttggcc |
128 |
Q |
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|||||||||||||||||||||| |
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| T |
742382 |
aaaagtagcacaatgtttggcc |
742403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 42449412 - 42449533
Alignment:
| Q |
7 |
aaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |
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| T |
42449412 |
aaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattactgaagtatgtgctttctccacttcttcc |
42449511 |
T |
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| Q |
107 |
aaaagtagcacaatgtttggcc |
128 |
Q |
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|||||||||||| ||||||||| |
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| T |
42449512 |
aaaagtagcacactgtttggcc |
42449533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 740194 - 740315
Alignment:
| Q |
7 |
aaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcg |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || |||| | |||||| ||||||||||||||||||| || |
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| T |
740194 |
aaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgctttctccacttgctct |
740293 |
T |
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| Q |
107 |
aaaagtagcacaatgtttggcc |
128 |
Q |
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||||||| |||| ||| ||||| |
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| T |
740294 |
aaaagtatcacactgtgtggcc |
740315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 10046689 - 10046583
Alignment:
| Q |
7 |
aaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcg |
106 |
Q |
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||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||||||||| ||||| || |
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| T |
10046689 |
aaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttctctacttcatca |
10046590 |
T |
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| Q |
107 |
aaaagta |
113 |
Q |
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||||||| |
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| T |
10046589 |
aaaagta |
10046583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 45468350 - 45468309
Alignment:
| Q |
7 |
aaaatccacagttctgccttgtccatcagttaaactcccatc |
48 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||| |
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| T |
45468350 |
aaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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