View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_high_14 (Length: 247)
Name: NF4721_high_14
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9838740 - 9838980
Alignment:
| Q |
1 |
atgatcagtgtggtttcctaatgccaaggcctctgctactgctacagttctgtttgggcaaaaccaaattaagttcaaaggaagaactagaagaaggaga |
100 |
Q |
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| T |
9838740 |
atgatcagtttggtttcctaatgccaaggcctctgctattgctacagttctgtttgggcaaaaccaagttaagttcaaaggaagaactagaagaaggaga |
9838839 |
T |
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| Q |
101 |
tgaaggtataaataccaaaatataggtaagaagaaagaaaaatgcttcatttggttaaggaacaagaggctaatagattcgttggtttgcttaattatac |
200 |
Q |
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| T |
9838840 |
tgaaggtataaataccaaaatataggtaagaagaaagaaaaatgcttcatttggttaaggaacaagaggctaatagattcgttggtttgc----ttatac |
9838935 |
T |
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| Q |
201 |
ttaggtaggaatgtataagaagcatgttttgtttcctatgtttct |
245 |
Q |
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| T |
9838936 |
ttaggtaggaatgtataagaagcatgttttgtttcctatgtttct |
9838980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 10592665 - 10592559
Alignment:
| Q |
89 |
agaagaaggagatgaaggtataaataccaaaa--tataggtaagaagaaagaaaaatgcttcatttggttaaggaacaagaggctaatagattcgttggt |
186 |
Q |
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||||||| ||||| |||||||| || |||||| ||||| ||| ||||||| |||| |||||||||| ||||| |||||| ||||||||||| ||| || |
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| T |
10592665 |
agaagaaagagataaaggtatacatgccaaaacatatagataacaagaaaggaaaaggcttcatttgtttaagtaacaaggcgctaatagattagttagt |
10592566 |
T |
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| Q |
187 |
ttgctta |
193 |
Q |
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| T |
10592565 |
tttctta |
10592559 |
T |
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