View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_high_17 (Length: 239)
Name: NF4721_high_17
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_high_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 9838212 - 9838434
Alignment:
| Q |
17 |
aatatctccctctaaattattaaaaacaaccccaaaacttatcaaggaagaaaggttacctatgaatggcgagattcctcctgttaaattgttttttcca |
116 |
Q |
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| T |
9838212 |
aatatctccctctaaattattataaacaaccccaaaacttatcaaggaagaaaggttacctatgaatggcgagattcctcctgttaaattgttttttcca |
9838311 |
T |
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| Q |
117 |
atgttcactataataagtttttgaagagaaccaatttcagctggtattttgccggttagattgtttccaagtaagtgcaaaactttaagattcaaacaac |
216 |
Q |
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| T |
9838312 |
atgttcactataataagtttttgaagagaaccaatttcagctggtattttgccagttagattgtttccaaataagtgcaaaactttaagattcgaacaac |
9838411 |
T |
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| Q |
217 |
ttgtcaagtttataggaatttct |
239 |
Q |
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| T |
9838412 |
ttgtcaagtttataggaatttct |
9838434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 10594083 - 10593862
Alignment:
| Q |
17 |
aatatctccctctaaattattaaaaacaaccccaaaacttatcaaggaagaaaggttacctatgaatggcgagattcctcctgttaaattgttttttcca |
116 |
Q |
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|||||| |||||||||| || || ||||||||| || ||||||||||||||| |||||||||||||||| ||| |||| ||||||| |||| ||| |
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| T |
10594083 |
aatatcaccctctaaatagttgtaaccaaccccaagacctatcaaggaagaaagattacctatgaatggcggtatttctccaattaaatt-attttccca |
10593985 |
T |
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| Q |
117 |
atgttcactataataagtttttgaagagaaccaatttcagctggtattttgccggttagattgtttccaagtaagtgcaaaactttaagattcaaacaac |
216 |
Q |
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| T |
10593984 |
atgttcattgcatgaagattttgtagagagccaattccagttggtatttttccagtgagtttgtttccatataagcgcaagactttaagattggagcaat |
10593885 |
T |
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| Q |
217 |
ttgtcaagtttataggaatttct |
239 |
Q |
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| T |
10593884 |
ttgtcaagttcgtagggatttct |
10593862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 24352347 - 24352285
Alignment:
| Q |
56 |
tatcaaggaagaaaggttacctatgaatggcgagattcctcctgttaaattgttttttccaat |
118 |
Q |
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| T |
24352347 |
tatcaaggaagaaagattacctatgaatggtgagattcctcctattaaattattttctccaat |
24352285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 24352289 - 24352210
Alignment:
| Q |
147 |
ccaatttcagctggtattttgccggttagattgtttccaagtaagtgcaaaactttaagattcaaacaacttgtcaagtt |
226 |
Q |
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|||||||||| |||||||||||| ||||||||||||| | ||| ||||| ||||||||||| | |||||||||||||| |
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| T |
24352289 |
ccaatttcagttggtattttgccagttagattgtttctatataaatgcaagcctttaagattcgagcaacttgtcaagtt |
24352210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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