View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_high_2 (Length: 464)
Name: NF4721_high_2
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_high_2 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 42522963 - 42522520
Alignment:
| Q |
17 |
agcatgatcccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42522963 |
agcatgatcccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtca |
42522864 |
T |
|
| Q |
117 |
tgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42522863 |
tgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcgctgattttgctcacatagttccggtcgagcaaaatgtt |
42522764 |
T |
|
| Q |
217 |
tccaggttttaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgc |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42522763 |
tccaggtttcaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaaaaggagaccggttgcaatctccgcagcaattcgaaatcttagctgc |
42522664 |
T |
|
| Q |
317 |
catggtagaactggtaatttactattatttctcctgaataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42522663 |
catggtagaactggtaatttactattatttctcctgaataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggac |
42522564 |
T |
|
| Q |
417 |
atgctccaaggaggagaaccatgtgtggatgccctatgctactc |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42522563 |
atgctccaaggaggagaaccatgtgtggatgccttatgctactc |
42522520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 42531171 - 42530728
Alignment:
| Q |
17 |
agcatgatcccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
42531171 |
agcatgatcccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtagcagaaagttccagcggttgctgtca |
42531072 |
T |
|
| Q |
117 |
tgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42531071 |
tgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcgctgattttgctcacatagttccggtcgagcaaaatgtt |
42530972 |
T |
|
| Q |
217 |
tccaggttttaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgc |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42530971 |
tccaggtttcaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaaaaggagaccggttgcaatctccgcagcaattcgaaatcttagctgc |
42530872 |
T |
|
| Q |
317 |
catggtagaactggtaatttactattatttctcctgaataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42530871 |
catggtagaactggtaatttactattatttctcctgaataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggac |
42530772 |
T |
|
| Q |
417 |
atgctccaaggaggagaaccatgtgtggatgccctatgctactc |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
42530771 |
atgctccaaggaggagaaccatgtgtggatgccttatgctactc |
42530728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 35082940 - 35083340
Alignment:
| Q |
17 |
agcatgatcccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtca |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | |||||||| || || || ||||| || || ||||| ||||||||||||||||| || | |||| |
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|
| T |
35082940 |
agcatgattccaagtgagtaaatatcagatttgataccaagcatgccggtttgctggtattcagggtcaatataacagaaagttccagcagtcgaagtca |
35083039 |
T |
|
| Q |
117 |
tgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtt |
216 |
Q |
| |
|
|||||||||| || || |||||| ||| || ||||| ||||||||||| | || ||||||| || |||||||||||||| ||||| ||||||||||| |
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| T |
35083040 |
tgcgatactgagtgacagtgtcttgaacagaaggaggaacaagccttgctaaaccaacatcaccaatcttgctcacatagtttcggtcaagcaaaatgtt |
35083139 |
T |
|
| Q |
217 |
tccaggttttaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgc |
316 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||| || || | || || || ||||||||| | ||||| | |||| |
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|
| T |
35083140 |
tccaggttttaagtcacgatgcacaatcggttctggtttagtctggtgaaggaaaagaagcccagtggctatttcagcagcaatttggaatctcaactgc |
35083239 |
T |
|
| Q |
317 |
catggtagaactggtaatttactattatttctcctgaataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggac |
416 |
Q |
| |
|
|| || ||| |||| ||||| |||||| || | ||||||||||| |||||||| | ||||| ||| ||||| | ||||||||| ||||||| |
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| T |
35083240 |
caaggaagaggtggttgtttac------ctctcctaaacaaacaatcatccaaacttccattagccatgtactcgtacactatgcaaccaaattccggac |
35083333 |
T |
|
| Q |
417 |
atgctcc |
423 |
Q |
| |
|
||||||| |
|
|
| T |
35083334 |
atgctcc |
35083340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 50439627 - 50439729
Alignment:
| Q |
353 |
aataggcaatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggacatgctccaaggaggagaaccatgtgtggatgcccta |
452 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||| ||||||||| || || ||| | |||||||| ||||| | |||||||||||||| |||||||| || |
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|
| T |
50439627 |
aataggcaatcttccaagcttccatttgacatgtactcatacactagacatccatattccggacaggctcctaagaggagaaccatgtttggatgccgta |
50439726 |
T |
|
| Q |
453 |
tgc |
455 |
Q |
| |
|
||| |
|
|
| T |
50439727 |
tgc |
50439729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 50439354 - 50439550
Alignment:
| Q |
74 |
tactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagcccta |
173 |
Q |
| |
|
||||| ||||| || |||||||| ||||| || ||||| ||||||||||| || ||||| |||| || || || || || ||||| ||||||| || | |
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|
| T |
50439354 |
tactcaggatctatataacagaatgttcctgctgttgccgtcatgcgatattgcgtcacactgtcggccacagatggcggaacaagtcttgccaaaccaa |
50439453 |
T |
|
| Q |
174 |
catcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaa |
270 |
Q |
| |
|
||||||| |||||| |||||||| | ||| ||||| |||||||| ||||| ||||| | || || | ||||| |||||||| ||||||||||| |
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|
| T |
50439454 |
catcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctggttttgtttggtgaaggaa |
50439550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 455
Target Start/End: Complemental strand, 1273873 - 1273777
Alignment:
| Q |
359 |
caatcatccaagcttccattggtcatgtgctcatacaccaggcaaccaaactccggacatgctccaaggaggagaaccatgtgtggatgccctatgc |
455 |
Q |
| |
|
||||||||||| ||||| || | |||||||||||| || ||||| || | |||||||| ||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
1273873 |
caatcatccaaacttccgttcgccatgtgctcataaacaaggcagccgtattccggacaggctcctaggaggagaaccatgtttggatgccttatgc |
1273777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 1274201 - 1274046
Alignment:
| Q |
25 |
cccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatac |
124 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||| || |||||||||||||| ||||| ||||||||||| ||||| || | | |||||| ||||| |
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|
| T |
1274201 |
cccaagtgagtaaatatcagatttcactcccaacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatat |
1274102 |
T |
|
| Q |
125 |
tgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcact |
180 |
Q |
| |
|
|||||||| ||||||| ||||| || || || || ||||||| || |||||||| |
|
|
| T |
1274101 |
tgtgtcacattgtctgctactgatggcggtactagtcttgccaaaccaacatcact |
1274046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 209 - 54
Alignment:
| Q |
25 |
cccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatac |
124 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||| || |||||||||||||| ||||| ||||||||||| ||||| || | | |||||| ||||| |
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|
| T |
209 |
cccaagtgagtaaatatcagatttcactcccaacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatat |
110 |
T |
|
| Q |
125 |
tgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcact |
180 |
Q |
| |
|
|||||||| ||||||| ||||| || || || || ||||||| || |||||||| |
|
|
| T |
109 |
tgtgtcacattgtctgctactgatggcggtactagtcttgccaaaccaacatcact |
54 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 45728252 - 45728085
Alignment:
| Q |
151 |
agggacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttca |
250 |
Q |
| |
|
|||||| |||||||||| || |||||||| || || | ||||| |||| ||| |||||||||||||| ||||| || ||||| |||||||| |||||| |
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|
| T |
45728252 |
agggaccagccttgccaaaccaacatcacttatcttacatacataattcctgtccagcaaaatgtttccgggtttcaaatcacgatgcaccaaaggttca |
45728153 |
T |
|
| Q |
251 |
ggttttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgcca |
318 |
Q |
| |
|
|| || ||||| || ||||| || | ||| |||| ||||| |||||||| || || || |||||||| |
|
|
| T |
45728152 |
ggcttcgtctgatgtaggaatagcaaacctgttgctatctctgcagcaatccggaacctaagctgcca |
45728085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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