View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_high_5 (Length: 297)
Name: NF4721_high_5
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 51767662 - 51767383
Alignment:
| Q |
18 |
caatatgcaacaaataaaagaaaatatggtgtagaaaatttgaccattcatttaaagtttcaaattatcacaacatgcgggggcatggggatgatgtggt |
117 |
Q |
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| T |
51767662 |
caatatgcaacaaataaaagaaaatatggtgtagaaaatttgaccattcatttaaagtttcaaattatcacaacatgcgggggcatggggatgatgtggt |
51767563 |
T |
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| Q |
118 |
aatgatttggcaagtgccaagagtcggcatcaaagaccttacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatcgaatagaacc |
217 |
Q |
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| T |
51767562 |
aatgatttggcaagtgccaagagtcggcatcaaagaccttacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatcgaatagaacc |
51767463 |
T |
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| Q |
218 |
acatatatcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgc |
297 |
Q |
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| T |
51767462 |
acatatatcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgc |
51767383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 51755810 - 51755680
Alignment:
| Q |
134 |
ccaagagtcggcatcaaagaccttacacaaacaccagatacaatacc--taataatttaacaaaataaaaatgatcgaatagaaccacatata------t |
225 |
Q |
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| T |
51755810 |
ccaagagtcggcatcgaagcacttgcacaaacac----tacaataccggtaataatt-aagaaaataaaaatgattgaatagaaccacatatatatcggt |
51755716 |
T |
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| Q |
226 |
cggtgtcatgcttgtgtcgaacaacaatatgtatcc |
261 |
Q |
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| T |
51755715 |
cggtgtcttgcttgtgttcaacaacagtatgtatcc |
51755680 |
T |
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