View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_high_6 (Length: 281)
Name: NF4721_high_6
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 44 - 271
Target Start/End: Complemental strand, 19396904 - 19396676
Alignment:
| Q |
44 |
gtacataactcctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttg |
143 |
Q |
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| T |
19396904 |
gtacataactactcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttg |
19396805 |
T |
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| Q |
144 |
atgtttgtcaatttaa-tttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctcagaatccgtgtcagtt |
242 |
Q |
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| T |
19396804 |
atgtttgtcaatttaattttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctcagaatccgtgtctgtt |
19396705 |
T |
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| Q |
243 |
tggctccagattagtagttaatgcctatg |
271 |
Q |
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| T |
19396704 |
tggctcaagattagtagttaatgtctatg |
19396676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 7767552 - 7767682
Alignment:
| Q |
55 |
ctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtgtgcttgatgtttgtcaa |
154 |
Q |
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| T |
7767552 |
ctcaaatttgttggtcgaagaaatcttctgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtttggggttcttgatgtttgccaa |
7767651 |
T |
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| Q |
155 |
ttt--aatttaattggctgaagtgtttaggc |
183 |
Q |
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| T |
7767652 |
ttttaattttaattggttgaagtgtttaggc |
7767682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 35481736 - 35481549
Alignment:
| Q |
38 |
ttaatggtacataactcctcaaatttgttggtcgagggaatcttgtgctattatgttgcagattggtgttttagtccttgtggtgcggatctgtctggtg |
137 |
Q |
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| T |
35481736 |
ttaatggtacataaatcctcaaatttttccct--agggattcttgtattattatgttgcagattggtgtttaattctttgtggtgtggatatgtttaggg |
35481639 |
T |
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| Q |
138 |
tgcttgatgtttgtcaatttaatttaattggctgaagtgtttaggcatgttggcggatcacgttttaggaactctattggttgtatctca |
227 |
Q |
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| T |
35481638 |
ttattgatgtttgtcaatttattttatttggttgaagtgtttaggtgtattagtggatcgtgtttcaggagctctcttggttgtatctca |
35481549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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