View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_10 (Length: 251)
Name: NF4721_low_10
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 12540545 - 12540667
Alignment:
| Q |
128 |
cgatcataatcacactctgcaaggaaagacatataaacgaagcctatgatttattttctgaaatgattgttaagaggaatatcatacctaataatttctt |
227 |
Q |
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| T |
12540545 |
cgatcataatcacactctgcatggaaagacatataaacgaagcctatgatttattttctgaaatgattgttaagaagaagatcataccttgtaatgacat |
12540644 |
T |
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| Q |
228 |
atattgctgtctagtctatggct |
250 |
Q |
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| T |
12540645 |
atattgctgtctagtctatggct |
12540667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 14508909 - 14508837
Alignment:
| Q |
130 |
atcataatcacactctgcaaggaaagacatataaacgaagcctatgatttattttctgaaatgattgttaaga |
202 |
Q |
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| T |
14508909 |
atcatattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaaga |
14508837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 6326853 - 6326786
Alignment:
| Q |
128 |
cgatcataatcacactctgcaaggaaagacatataaacgaagcctatgatttattttctgaaatgatt |
195 |
Q |
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| T |
6326853 |
cgatcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt |
6326786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 47569148 - 47569211
Alignment:
| Q |
132 |
cataatcacactctgcaaggaaagacatataaacgaagcctatgatttattttctgaaatgatt |
195 |
Q |
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| T |
47569148 |
catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgatt |
47569211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 12535546 - 12535505
Alignment:
| Q |
161 |
taaacgaagcctatgatttattttctgaaatgattgttaaga |
202 |
Q |
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| T |
12535546 |
taaacgaagcctatgctttattttctgaaatagttgttaaga |
12535505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 1717877 - 1717948
Alignment:
| Q |
131 |
tcataatcacactctgcaaggaaagacatataaacgaagcctatgatttattttctgaaatgattgttaaga |
202 |
Q |
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| T |
1717877 |
tcatattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaaga |
1717948 |
T |
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