View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4721_low_13 (Length: 248)
Name: NF4721_low_13
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 34953680 - 34953897
Alignment:
| Q |
17 |
cattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccaccttctccacttgatgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34953680 |
cattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccaccttctccgcttgatgg |
34953779 |
T |
|
| Q |
117 |
ttcaactcttactccaccacctgttcagcaagtcggttcatctccaccaccactagggactgatgtgacaaatccaattactccaactcaatctcctgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953780 |
ttcaactcttactccaccacctgttcagcaagtcggttcatctccaccaccactagggactgatgtgacaaatccaattactccaactcaatctcctgtt |
34953879 |
T |
|
| Q |
217 |
tcagaacctcctcctcct |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34953880 |
tcagaacctcctcctcct |
34953897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University