View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_16 (Length: 240)
Name: NF4721_low_16
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8355483 - 8355261
Alignment:
| Q |
1 |
ctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattga |
100 |
Q |
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| T |
8355483 |
ctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattga |
8355384 |
T |
|
| Q |
101 |
ataagttaatc-aaaccctcaaattttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctc |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355383 |
ataagttaatcgaaaccctcaaattttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctc |
8355284 |
T |
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| Q |
200 |
catctgccacaccatggacatat |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
8355283 |
catctgccacaccatggacatat |
8355261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 8482871 - 8483076
Alignment:
| Q |
13 |
aaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatca |
112 |
Q |
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| T |
8482871 |
aaacccacaggctgggaatgtttcactgtctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattg----agttataag |
8482966 |
T |
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| Q |
113 |
aaccctcaaattttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacacc |
212 |
Q |
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| T |
8482967 |
taccctcaaattttagaacataataattgaatgagttattctttccagctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacacc |
8483066 |
T |
|
| Q |
213 |
atggacatat |
222 |
Q |
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|||||||||| |
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| T |
8483067 |
atggacatat |
8483076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8349430 - 8349213
Alignment:
| Q |
1 |
ctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
8349430 |
ctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagtatctaatccaacattggaaaaatattggaaatcacatgaattga |
8349331 |
T |
|
| Q |
101 |
---ataagttaatcaaaccctcaaattttagaacataataattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatc |
197 |
Q |
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| T |
8349330 |
gctataagt-------accctcaaattttataacataataattggatgagttattctttccagctttgggtagacatcgattgtagtcgctgaatgcatt |
8349238 |
T |
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| Q |
198 |
tccatctgccacaccatggacatat |
222 |
Q |
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|||||||||||||||||||| |||| |
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| T |
8349237 |
tccatctgccacaccatggatatat |
8349213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 8350398 - 8350325
Alignment:
| Q |
146 |
agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
219 |
Q |
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| T |
8350398 |
agttattctttccagctccagctggacatcgattggagtcgatgaataaagctccatctgccaaaccatggaca |
8350325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 8480715 - 8480788
Alignment:
| Q |
146 |
agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
219 |
Q |
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| T |
8480715 |
agttattctttccagctccagctagacatagattggagtctcttaatgaagctccatctgccacaccattgaca |
8480788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 8432760 - 8432701
Alignment:
| Q |
33 |
tttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcaca |
92 |
Q |
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|||||||| |||||||||| |||||| |||| |||||| ||||||||||||||||||| |
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| T |
8432760 |
tttcactgcctttgtcatcctataattgaatctaacattaaaaacatattggaaatcaca |
8432701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 1169539 - 1169593
Alignment:
| Q |
168 |
tagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
222 |
Q |
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| T |
1169539 |
tagagatcgattggagcggctgaatgcatctccatctgccacaccctggacatat |
1169593 |
T |
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