View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_17 (Length: 239)
Name: NF4721_low_17
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 25516869 - 25517074
Alignment:
| Q |
17 |
agaaataagaggggttttctcaagaattctggggctt-gttacatagtcactcatt-gtaatgtgtcacattcttgatatgaacaagtatcaaagggatg |
114 |
Q |
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| T |
25516869 |
agaaataagaggggttttctcaagaattttgcggctttgttacatagtcacacatttgtaatgtgtcacattcttgatatgaacaagtatcaaagggatg |
25516968 |
T |
|
| Q |
115 |
ttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggatt |
214 |
Q |
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| T |
25516969 |
ttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaactaagttaaggacccatgaaactagaagtcctttggctttgaggatt |
25517068 |
T |
|
| Q |
215 |
cgagtg |
220 |
Q |
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|||||| |
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| T |
25517069 |
cgagtg |
25517074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 25525223 - 25525019
Alignment:
| Q |
17 |
agaaataagaggggttttctcaagaattctggggcttgttacatagtcactcattgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgtt |
116 |
Q |
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||||||||||||| |||||| ||||||||||||||| ||||| | ||||| ||| ||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
25525223 |
agaaataagagggtttttcttaagaattctggggctagttacttggtcacacatcataatgtgtcacattcttgatatgaacacatattcaagggatgtc |
25525124 |
T |
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| Q |
117 |
ctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagtt-aaggacccatgaaactagtagtcctttggctttgaggattc |
215 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| || || | ||| ||||||||||||||||||||| |||| |
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| T |
25525123 |
ctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaatctccaacgaagctagtagtcctttggctttgacgattt |
25525024 |
T |
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| Q |
216 |
gagtg |
220 |
Q |
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||||| |
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| T |
25525023 |
gagtg |
25525019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 25537678 - 25537546
Alignment:
| Q |
86 |
tcttgatatgaacaagtatcaaagggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatg |
185 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| |||| |||| |||||||| | ||| || |
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| T |
25537678 |
tctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttg |
25537579 |
T |
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| Q |
186 |
aaactagtagtcctttggctttgaggattcgag |
218 |
Q |
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|| | ||||||||| |||||||||||||||| |
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| T |
25537578 |
aagttgctagtccttttgctttgaggattcgag |
25537546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 44461249 - 44461064
Alignment:
| Q |
17 |
agaaataagaggggttttctcaagaattctggggcttgttacatagtcactcattgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgtt |
116 |
Q |
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||||||||||||| ||||||| ||||||| ||||| ||| ||||| | | ||||||||| ||||||||||| |||||||||||||| | || |||| |
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| T |
44461249 |
agaaataagagggtttttctcgagaattccggggcgcgttgtatagttatgccttgtaatgtttcacattcttggtatgaacaagtatccataggttgtt |
44461150 |
T |
|
| Q |
117 |
ctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttg |
202 |
Q |
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|||| |||||||||| |||||||||||||||||| || ||| | |||||| ||||||||| | | | |||| || ||||||||||| |
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| T |
44461149 |
ctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctggtagtcctttg |
44461064 |
T |
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