View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_19 (Length: 226)
Name: NF4721_low_19
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13609777 - 13609987
Alignment:
| Q |
1 |
taaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609777 |
taaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgct |
13609876 |
T |
|
| Q |
101 |
tgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13609877 |
tgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatggagccacaaagaaggaaattggccgtgcaaaagaatacatagtga |
13609976 |
T |
|
| Q |
201 |
aacaacttggt |
211 |
Q |
| |
|
||||||||||| |
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| T |
13609977 |
aacaacttggt |
13609987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14074834 - 14075040
Alignment:
| Q |
1 |
taaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
14074834 |
taaggaccgagctaatgagatatataagcgggttgaagatcagaagtctagtaagggaagaaatcaggaagcattattggctgcttgcgtctacattgct |
14074933 |
T |
|
| Q |
101 |
tgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtga |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
14074934 |
tgtcgacaagaagacaagccacgcactataaaggaaatttgtttgattgccaatggagccaccaagaaggaaattgtccgcgcaaaagaatacatagtga |
14075033 |
T |
|
| Q |
201 |
aacaact |
207 |
Q |
| |
|
||||||| |
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| T |
14075034 |
aacaact |
14075040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14150245 - 14150451
Alignment:
| Q |
1 |
taaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| | ||||||||| ||||| || |||||| || |||||||||||||||||||||||||||||||| |
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| T |
14150245 |
taaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgcctctacattgct |
14150344 |
T |
|
| Q |
101 |
tgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||| |||| | || |||||||||||||||||||||||| |||||| ||||||| ||| |
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|
| T |
14150345 |
tgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgctattggagccaccaagaaggaaattggccgcgcaaaacaatacatcatga |
14150444 |
T |
|
| Q |
201 |
aacaact |
207 |
Q |
| |
|
||||||| |
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|
| T |
14150445 |
aacaact |
14150451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 36012786 - 36012655
Alignment:
| Q |
3 |
aggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcctg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
36012786 |
aggaccgagctaatgagatatataagcgggttgaagatcagaagtctagcaggggaagaaatcaggacgcattattggctgcttgcctctacattgcttg |
36012687 |
T |
|
| Q |
103 |
tcgacaagaagacaagccacgcactgtaaagg |
134 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
36012686 |
tcgacaagaagacaagccacgcaccgtaaagg |
36012655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 36012561 - 36012488
Alignment:
| Q |
134 |
gaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtgaaacaact |
207 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36012561 |
gaaatttgctcaattgccaatggagccaccaagaaggaaattggccgcgcaaaagaatacatagtgaaacaact |
36012488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 22091012 - 22090880
Alignment:
| Q |
2 |
aaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcctctacattgcct |
101 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||| |||| || ||||||||||| |||||||||||||| || || ||||||||||| ||||||| || | |
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| T |
22091012 |
aaggatcgagcaaatgagatatataagagggttgaagaccaaaagtctagtagaggaagaaatcaagatgctttgttggctgcttgtatctacatcgctt |
22090913 |
T |
|
| Q |
102 |
gtcgacaagaagacaagccacgcactgtaaagg |
134 |
Q |
| |
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| ||||||||||| || ||| | |||||||||| |
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| T |
22090912 |
gccgacaagaagagaaaccaagaactgtaaagg |
22090880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 22090788 - 22090711
Alignment:
| Q |
134 |
gaaatttgctcggttgccaatgtagccaccaagaaggaaattggccgtgcaaaagaatacatagtgaaacaacttggt |
211 |
Q |
| |
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||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
22090788 |
gaaatttgctctgttgccaatggtgccacaaagaaggaaattggccgagcaaaagagtacatagtgaaacaacttggt |
22090711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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