View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_2 (Length: 525)
Name: NF4721_low_2
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4004187 - 4004409
Alignment:
| Q |
1 |
ctttgatccaagatcagccagaatcttcttttcatcacttgtaagactgttctttgaccctaaagccatcacaatatgtcttgctgcagcaattaaattc |
100 |
Q |
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| T |
4004187 |
ctttgatccaagatcagccagaatcttcttttcatcatttgtaagactgttctttgaccctaaagccatcacaatatgtcttgctgcagcaattaaattc |
4004286 |
T |
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| Q |
101 |
tcctctcttgctaactcaggaatcacttgcctagattcctcaacagccattgagaatcaaattcttcaaaaacaacaataatcactaaaatcacttcaat |
200 |
Q |
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| T |
4004287 |
tcctctctttctaactcaggaatcacttgcctagattcctcaacagccattgagaatcaaattcttcaaaaacaacaataatcactaaaatcacttcaat |
4004386 |
T |
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| Q |
201 |
ttcaaacctttttcacctctccc |
223 |
Q |
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| T |
4004387 |
ttcaaacctttttcacctctccc |
4004409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 342 - 485
Target Start/End: Original strand, 4004533 - 4004676
Alignment:
| Q |
342 |
cagcacttcattcaccacaacaattcacaaaacgacccagaaacactaatcactacaacaagcttaacaaaacccaccaatcaaatccaagaacaaaaac |
441 |
Q |
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| T |
4004533 |
cagcacttcattcaccacaacaattcacaaaacgacccagaaacactaatcactacaacaagcttaacaaaacccaccagtcaaatccaagaacaaaaac |
4004632 |
T |
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| Q |
442 |
atcaaaagggtatgaagaaaaaccttattacacctgcatcaaac |
485 |
Q |
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| T |
4004633 |
atcaaaagggtatgaagaaaaaccttattatacctgcatcaaac |
4004676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 342 - 485
Target Start/End: Original strand, 4009925 - 4010068
Alignment:
| Q |
342 |
cagcacttcattcaccacaacaattcacaaaacgacccagaaacactaatcactacaacaagcttaacaaaacccaccaatcaaatccaagaacaaaaac |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4009925 |
cagcacttcattcaccacaacaattcacaaaacgacccagaaacactaatcactacaacaagcttaacaaaacccaccagtcaaatccaagaacaaaaac |
4010024 |
T |
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| Q |
442 |
atcaaaagggtatgaagaaaaaccttattacacctgcatcaaac |
485 |
Q |
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| T |
4010025 |
atcaaaagggtatgaagaaaaaccttattatacctgcatcaaac |
4010068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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