View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_4 (Length: 320)
Name: NF4721_low_4
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 42693904 - 42694193
Alignment:
| Q |
14 |
agggaacaaccaaggatgagggctatgatggttagtataattcttaaacttactattaggtcagtctttgtgctgatgcaattccgattatataatcaaa |
113 |
Q |
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| T |
42693904 |
agggaacaaccaaggatgaggactatgatggttagtataattcttaaacttactattaggttagtctttgtgctgatgcaattccgattatataatcaaa |
42694003 |
T |
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| Q |
114 |
aacagttttccataaattcttgacacaagaggggtgtgcaaggagagtgtttgaattttgtaattcaataaaaacaagaaacgtgcttgttatatgggtt |
213 |
Q |
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| T |
42694004 |
aacagttttccctaaattcttgacacaagaggggtgtgtaag--gagtgtttgaattttgtaattcaataaaaacaagaaacgtgcttgttatatgggtt |
42694101 |
T |
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| Q |
214 |
ttcatattgtataattcgaataggtgaaacattcatttttcacccaaaaatagagagaaaactcgattcaaataagaccacatagtgaaaat |
305 |
Q |
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| T |
42694102 |
ttcatattgtataattcgaataaatgaaacattcattttccacccaaaaatagagagaaaactcaattcaaataagaccacgtagtgaaaat |
42694193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 5405360 - 5405418
Alignment:
| Q |
219 |
attgtataattcgaataggtgaaacattcatttttcacccaaaaatagagagaaaactc |
277 |
Q |
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| T |
5405360 |
attgtataatccgaataggtgaaaaactcattttccatacaaaaatagagtgaaaactc |
5405418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 51817109 - 51817068
Alignment:
| Q |
224 |
ataattcgaataggtgaaacattcatttttcacccaaaaata |
265 |
Q |
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| T |
51817109 |
ataatttgaataggtgaaaaattcatttttcacccaaaaata |
51817068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 42075962 - 42075894
Alignment:
| Q |
83 |
gtgctgatgcaattccgattatataatcaaaaacagttttccataaattcttgacacaagaggggtgtg |
151 |
Q |
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| T |
42075962 |
gtgctgatacaattcagattatataataaaaatcagtttttcctgaattcttggcacaacaggagtgtg |
42075894 |
T |
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