View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4721_low_8 (Length: 267)
Name: NF4721_low_8
Description: NF4721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4721_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 12540874 - 12541120
Alignment:
| Q |
1 |
tgtcaatccgtgattggtggactatacaacggtggaacagttaaagttacaagaaaggtggaagagttgagtttgagattttcctattgttttctgaaaa |
100 |
Q |
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| T |
12540874 |
tgtcaatccgtggttggtggactatacaatggtggaacagttaaagttacaagaaagatggaagagttgagtttgagattttctgtttgttttctggaaa |
12540973 |
T |
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| Q |
101 |
atc---attactgaggttannnnnnnnnnnnnnnnnnnnntcatgtgtgttcttgcttgaccttagctttcctgataataatatgggtctagctgtacca |
197 |
Q |
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| T |
12540974 |
atcattattacttaggttaattattatgattatatttatttcatgtgtgttcttgcttgaccttagctttcctgataataatatgggtctagctgtacca |
12541073 |
T |
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| Q |
198 |
tattgaaataaggatggatgctgctgcgaaggaaggacggaaggagctac |
247 |
Q |
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| T |
12541074 |
tattgaaataaggatgga---tccttcaaaggaaggacggaaggagctac |
12541120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 12535269 - 12535197
Alignment:
| Q |
3 |
tcaatccgtgattggtggactatacaacggtggaacagttaaagttacaagaaaggtggaagagttgagtttg |
75 |
Q |
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| T |
12535269 |
tcaatctgtggttggtggactatacaaaggtggaagagttaaggttgcaagaaaagtggaagagctgagtttg |
12535197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 36007986 - 36007923
Alignment:
| Q |
52 |
agaaaggtggaagagttgagtttgagattttcctattgttttctgaaaaatcattactgaggtta |
116 |
Q |
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| T |
36007986 |
agaaaggtggaagagttgagtttgagattttccgtttg-tttctggaaaatcattactgaggtta |
36007923 |
T |
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