View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4723-Insertion-1 (Length: 1020)

Name: NF4723-Insertion-1
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4723-Insertion-1
NF4723-Insertion-1
[»] chr8 (8 HSPs)
chr8 (258-942)||(13980108-13980795)
chr8 (8-260)||(13981027-13981286)
chr8 (446-603)||(10274095-10274252)
chr8 (458-603)||(10244369-10244514)
chr8 (458-603)||(10266338-10266483)
chr8 (410-603)||(10285900-10286093)
chr8 (787-869)||(10273890-10273972)
chr8 (817-851)||(10266159-10266193)
[»] chr1 (1 HSPs)
chr1 (359-638)||(18046474-18046752)
[»] chr7 (2 HSPs)
chr7 (409-640)||(48366457-48366688)
chr7 (784-881)||(48366778-48366875)


Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 258 - 942
Target Start/End: Complemental strand, 13980795 - 13980108
Alignment:
Q  258 caacattagcattcatactttaccatcttcaatctttcattgatattactaaaaccactctagtcactttgtttgtgttgttgttgaaggattgtgtgaa 357  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13980795 caacatcagcattcatactttaccatcttcattctttcattgatattactaaaaccactctagtcactttgtttgtgttgttgttgaagggttgtgtgaa 13980696  T
Q  358 aatattatagaaaatggacaaattaatacaagaatttgaggcattgagcacagatgcagaaaaggttcaaatgaatacattgaaacgaattttgaaagac 457  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13980695 aatattatagaaaatggacaaatttatacaagaatttgaggcattgagcacagatgcagaaaaggttcaaatgaatacattgaaacgaattttggaagac 13980596  T
Q  458 aatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatcccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttgg 557  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||    
T  13980595 aatgcatcagcgcaatatttacagaatttaggtcttaatggaaaaactgatcccgaaagtttcaaggcatgtgttccacttgttacacacaaagattcgg 13980496  T
Q  558 aaccttatatcaatagaattattgatggtgatgcttctcctattctaactacaaagcccgtcacagctatgtctttaaggtgtactgttgtcttcttttt 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  13980495 aaccttatatcaatagaattattgatggtgatgcttctcctattctaactacaaagcccatcacagctatgtctttaaggtgtactgttgttttcttttt 13980396  T
Q  658 acaatttcatatgttacagacatttgatttttgttgcttcgtaacgttaatctttcgtatattatacgctatatttgttttgtatacgattgcaacgtag 757  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13980395 acaatttcatatgttacatacatttgatttttgttgcttcgtaacgttaatctttcgtatattatacgctatatttgttttgtatacaattgcaacgtag 13980296  T
Q  758 aaagtttctaaatctgagaaccatgctcttgcagttctggcactacccaagggattcctaaatatataccatggaatgatgaagtgtttgaaacaacggt 857  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| ||    
T  13980295 aaagtttctaaatctgagaaccatgctcttgcagttctggcactacccaaaggaagcctaaatatataccatggaatgatgaagtgtttgaaacaacagt 13980196  T
Q  858 gcagatacatcaggccttttttgcatatct-aaacaggttcatttcatttattaaaaaa--gttaatatatgtttacccctgtaatat 942  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13980195 gcagatacatcaggccttttttgcatatctaaaacaggttcatttcatttattaaaaaaaggttaatatatgtttacccctgtaatat 13980108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 13981286 - 13981027
Alignment:
Q  8 acttgatgtgtaagctaaccttatagagtgctccctcagttttagatacttgctaatgcatagtagcttatga-gtagaaacatgtgtctataagtatat 106  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  13981286 acttgatgtgtaagctaaccttatagagtgttccctcagttttagatacttgctaatgcatagtagcttatgatgtagaagcgtgtgtctataagtatat 13981187  T
Q  107 gttgtaaactcatggttcattaatggaaataactctttcatttacttcgaaaaattagcaatgaacatggttaaaatggtaataa-ttcatatatggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  13981186 gttgtaaactcatggttcattaatggaaataactctttcatttacttcgaaaaattagcaatgaacatggttaaaatggtaataatttcatatatggaac 13981087  T
Q  206 aagttgactgctttatatcacattat-----tagtaaatctggagggaattagatggcaa 260  Q
    ||||| | || |||||||||||||||     |||||||||||||||||||||||||||||    
T  13981086 aagttaagtgttttatatcacattattgtactagtaaatctggagggaattagatggcaa 13981027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 446 - 603
Target Start/End: Complemental strand, 10274252 - 10274095
Alignment:
Q  446 attttgaaagacaatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatcccgaaagtttaaaggcatgtgttccacttcttacac 545  Q
    |||||| |||| |||||||||||  |||| || |||| |||| | || ||||||| ||||||||| ||||| || ||||||||||||||| |  | ||      
T  10274252 attttggaagaaaatgcatcagctgaatacttgcagagtttaggactgaatggaagaactgatcctgaaagcttcaaggcatgtgttccattggtcactt 10274153  T
Q  546 acaaagatttggaaccttatatcaatagaattattgatggtgatgcttctcctattct 603  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  10274152 acaaagatttggaaccttatattaatagaattgttgatggtgatgtttctcctattct 10274095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 458 - 603
Target Start/End: Complemental strand, 10244514 - 10244369
Alignment:
Q  458 aatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatcccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttgg 557  Q
    |||||||||||  |||| || |||| |||| | || ||||||| ||||||||| ||||| || ||||||||||||||| |  | ||  ||||||||||||    
T  10244514 aatgcatcagctgaatacttgcagagtttaggactgaatggaagaactgatcctgaaagcttcaaggcatgtgttccattggtcacttacaaagatttgg 10244415  T
Q  558 aaccttatatcaatagaattattgatggtgatgcttctcctattct 603  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||    
T  10244414 aaccttatattaatagaattgttgatggtgatgtttctcctattct 10244369  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 458 - 603
Target Start/End: Complemental strand, 10266483 - 10266338
Alignment:
Q  458 aatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatcccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttgg 557  Q
    |||||||||||  |||| || |||| |||| | || ||||||| ||||||||| ||||| || ||||||||||||||| |  | ||  ||||||||||||    
T  10266483 aatgcatcagctgaatacttgcagagtttaggactgaatggaagaactgatcctgaaagcttcaaggcatgtgttccattggtcacttacaaagatttgg 10266384  T
Q  558 aaccttatatcaatagaattattgatggtgatgcttctcctattct 603  Q
    |||||||||||||||||||  |||||||||||  ||||||||||||    
T  10266383 aaccttatatcaatagaatagttgatggtgatttttctcctattct 10266338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 410 - 603
Target Start/End: Complemental strand, 10286093 - 10285900
Alignment:
Q  410 gatgcagaaaaggttcaaatgaatacattgaaacgaattttgaaagacaatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatc 509  Q
    ||||| ||||| ||||||| | | |||||||||   |||||| |||| ||||||||| |  ||||||| || | |||| | || ||||| | ||||||||    
T  10286093 gatgctgaaaatgttcaaaaggaaacattgaaaaagattttggaagaaaatgcatcatctgaatatttgcaaagtttagggctgaatggtagaactgatc 10285994  T
Q  510 ccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttggaaccttatatcaatagaattattgatggtgatgcttctcctattct 603  Q
      |||||||| ||||  ||||||||| |  | |   |||||||||||||  |||||||| |||||||  |||||||||||| ||||||||||||    
T  10285993 ttgaaagtttcaagggttgtgttccattggtcatttacaaagatttggagacttatatcgatagaatggttgatggtgatgtttctcctattct 10285900  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 787 - 869
Target Start/End: Complemental strand, 10273972 - 10273890
Alignment:
Q  787 tgcagttctggcactacccaagggattcctaaatatataccatggaatgatgaagtgtttgaaacaacggtgcagatacatca 869  Q
    ||||||||||| ||||  |||||||  |  |||| ||||||||||||||||||| |||||||||| || ||||||||| ||||    
T  10273972 tgcagttctggtactagtcaagggaagcaaaaatgtataccatggaatgatgaattgtttgaaaccacagtgcagatatatca 10273890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 817 - 851
Target Start/End: Complemental strand, 10266193 - 10266159
Alignment:
Q  817 aaatatataccatggaatgatgaagtgtttgaaac 851  Q
    |||||||||||||||||||||||| ||||||||||    
T  10266193 aaatatataccatggaatgatgaattgtttgaaac 10266159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 359 - 638
Target Start/End: Complemental strand, 18046752 - 18046474
Alignment:
Q  359 atattatagaaaatggacaaattaatacaagaatttgaggcattgagcacagatgcagaaaaggttcaaatgaata-cattgaaacgaattttgaaagac 457  Q
    |||||| ||||||||||||| || ||| |||||||||||| | |||| |||||||||| || |||||||| || || || |||||||||||||| | ||     
T  18046752 atattaaagaaaatggacaagtttatagaagaatttgaggaagtgagtacagatgcagcaagggttcaaa-gagtaacactgaaacgaattttggaggat 18046654  T
Q  458 aatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgatcccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttgg 557  Q
    ||||||| |||  ||||||| || |||||  |||||||||||| ||||||||| || ||||| |||  ||||||||||||| ||||||||||||||||||    
T  18046653 aatgcattagcagaatatttgcaaaatttgggtcttaatggaagaactgatcctgagagtttcaagttatgtgttccacttgttacacacaaagatttgg 18046554  T
Q  558 aaccttatatcaatagaattattgatggtgatgcttctcctattctaactacaaagcccgtcacagctatgtctttaaggt 638  Q
    ||||   |||||| |||||||||||||||||||||||| || |||| |||||||| || ||||||||||||||||||||||    
T  18046553 aacc-agtatcaacagaattattgatggtgatgcttcttcttttctcactacaaaacctgtcacagctatgtctttaaggt 18046474  T

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Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 409 - 640
Target Start/End: Original strand, 48366457 - 48366688
Alignment:
Q  409 agatgcagaaaaggttcaaatgaatacattgaaacgaattttgaaagacaatgcatcagcgcaatatttacagaatttatgtcttaatggaaaaactgat 508  Q
    ||||||||||| |||||| | | | ||| | ||| |||||||| |||  |||||||||||  ||||||| ||||||||  ||||| |||||| |||||||    
T  48366457 agatgcagaaagggttcagagggaaacactcaaaagaattttggaagttaatgcatcagctgaatatttgcagaattttggtcttgatggaagaactgat 48366556  T
Q  509 cccgaaagtttaaaggcatgtgttccacttcttacacacaaagatttggaaccttatatcaatagaattattgatggtgatgcttctcctattctaacta 608  Q
    |  || ||||| ||| | ||| |||||||   ||| |||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| |||     
T  48366557 cttgagagtttcaagtcttgtattccactagctactcacaaagacttggaaccttttatcaatagaattcttgatggtgatgattctcctattctcactg 48366656  T
Q  609 caaagcccgtcacagctatgtctttaaggtgt 640  Q
     ||| ||  | ||  |||||||||||||||||    
T  48366657 gaaaacctattaccactatgtctttaaggtgt 48366688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 784 - 881
Target Start/End: Original strand, 48366778 - 48366875
Alignment:
Q  784 tcttgcagttctggcactacccaagggattcctaaatatataccatggaatgatgaagtgtttgaaacaacggtgcagatacatcaggccttttttgc 881  Q
    |||||||||||||||||||| |||||||  || |||||||||||||||||||||||| |||||||||| ||| |||||||| ||| | ||| ||||||    
T  48366778 tcttgcagttctggcactacgcaagggaagccaaaatatataccatggaatgatgaattgtttgaaactacgatgcagatatatcggacctcttttgc 48366875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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