View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4723-Insertion-3 (Length: 767)
Name: NF4723-Insertion-3
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 7 - 651
Target Start/End: Original strand, 36399615 - 36400262
Alignment:
| Q |
7 |
agtaatgaaatgttcaaaccctacaaataaacatcgcatccaactaaaaaatagaagtatgtgaaatttgtaagaatttgctaccatcaacatagataag |
106 |
Q |
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| T |
36399615 |
agtaatgaaatgttcaaaccctacaaataaacatagcatccaactaaaaaatagaagtatgtgaaatttgtaagaatttgctaccatcaacatagataag |
36399714 |
T |
|
| Q |
107 |
ataacaacacttcttcaaaacaaaaaa--tcaatatagaaagcacaaataccatcgaaagagaaaagtaaaatttataata-tgaatttattgattattc |
203 |
Q |
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| T |
36399715 |
ataacaacacttcttaaaaaaaaaaaaaatcaatatagaaagcacaaataccatcgaaagagaaaagtaaaatttataataatgaatttattgactattc |
36399814 |
T |
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| Q |
204 |
attgattactcaataaagaaaataaaagagtactattcatgaatgaatcagaccactacttagaaaaacccatttagcttcttgaagaaaagaaggttca |
303 |
Q |
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| T |
36399815 |
attgattactcaataaagaaaataaaagagtactattcatgaatgaatcagaccactacttagaaaaacccatttagcttcttgaagaaaagaaggttca |
36399914 |
T |
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| Q |
304 |
tatgccgtggagaaagttcaactttttattttgaataaactctcaaacttagtttatgaactatccccttcaacttagtttataaaacttggtcaagaat |
403 |
Q |
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| T |
36399915 |
tatgccgtggagaaagttcaactttttattttgaataaactctcaaacttagtttatgaactatccccttcaacttagtttataaaacttggtcaagaat |
36400014 |
T |
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| Q |
404 |
aaacttaatctgtaaggtatattttagttctcctaaaattcttttaaatatataaagttagtcgttttaattgaagaaatttcaagtctattatactcta |
503 |
Q |
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| T |
36400015 |
aaacttaatctgtaaggtatattttagttctcctaaaattcttttaaatatataaagttagtcgttttaattgaagaaatttcaagtctattatactcta |
36400114 |
T |
|
| Q |
504 |
tctgtctcattataaattgtactcacaattttacgtaaattaataaatgtaattaattttatatttgtatatgagaaagagnnnnnnncaagtgatttta |
603 |
Q |
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| T |
36400115 |
tctgtctcattataaattgtactcataattttacgtaaattaataaatgtaattaattttatatttgtatatgagaaagagaaaaaaacaagtgatttta |
36400214 |
T |
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| Q |
604 |
caaaactaacgtgtgcatgtcgaaatatttgtcacagtagtgtgaata |
651 |
Q |
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| T |
36400215 |
caaaactaacgtgtgcatgtcgaaatatttgtcacagtagtgtgaata |
36400262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 667 - 767
Target Start/End: Original strand, 36400248 - 36400343
Alignment:
| Q |
667 |
acagtagtgtgaatatgatctttgatggagggaactttatgaagnnnnnnnntctataaaggatcatatatgttttgtttattttctaattaattttttg |
766 |
Q |
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| T |
36400248 |
acagtagtgtgaatatgatctttggtggagg-aactttatgaa---aaaaaatctataaag-atcgtatatgttttgtttattttttaattaattttttg |
36400342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 564
Target Start/End: Original strand, 10895017 - 10895050
Alignment:
| Q |
531 |
attttacgtaaattaataaatgtaattaatttta |
564 |
Q |
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| T |
10895017 |
attttacataaattaataaatgtaattaatttta |
10895050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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