View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4723-Insertion-5 (Length: 641)
Name: NF4723-Insertion-5
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Complemental strand, 40494658 - 40494039
Alignment:
| Q |
8 |
caaatgacataggcacgatagttgaagtatagacgtggtatctaaaaacggcagaattgtattgggatgcgagaaataaatgcaaaacctatatccaaaa |
107 |
Q |
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| T |
40494658 |
caaatgacataggcacgatagttgaagtatagacgtggtatcaaaaaacggcagaattgtattgggatgcgagaaataaatgcaaaacctatatccaaag |
40494559 |
T |
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| Q |
108 |
acacactatttaccgctaaaagtagttttttgttgtggtgtgatgtgatggattttccgtgtatcaacagatgtttttgtcactgttttgttttgtttga |
207 |
Q |
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| T |
40494558 |
acacactatttaccgctaaaagtagttttttgttgtggtgtgatgtgatggattttccgtgtatcaacagatgtttttgtcactgttttgttttgtttga |
40494459 |
T |
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| Q |
208 |
tggattcaacgcttcgctgttctcgtgtgttgcacgtgggatttagtgtgaattggaaaataacaaaagggtcnnnnnnncaagagggtcaaaaaagaca |
307 |
Q |
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| T |
40494458 |
tggattcaatgcttctctgttctcgtgtgttgcacgtgggatttagtgtgaattggaaaataacaaaagggtcaaaaaaacaagagggtcaaaaaagaca |
40494359 |
T |
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| Q |
308 |
attaattagctactatttggtcaatgttctttcatacacattccttttggaattaacacacattttattggttaaattcatgcattttttagtatgctaa |
407 |
Q |
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| T |
40494358 |
attaattagctactatttggtcaatgttctttcatgcacattccttttggaattaacacac--------------attcatgcattttttagtatgctaa |
40494273 |
T |
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| Q |
408 |
ttgtacccaataaatgtgttgctaagtgctaacgctttcaaacacttctcttcgaaaaatgaagtttcatatgcatgggttccaattaggcgatcaaatg |
507 |
Q |
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| T |
40494272 |
ttgtacccaataaatgtgttgctaagtgctaacgctttcaaacacttctcttcgaaaaatgaagtttcatatgcatgggttccaattaggcgatcaaatg |
40494173 |
T |
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| Q |
508 |
tgagagtaatgataaaagtataatcacaaaggaccactttaagtgaggatattctgtactgttgaagcctgaaggtattacaatacaaattacaaacgac |
607 |
Q |
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| T |
40494172 |
tgagagtaatgataaaagtataatcacaaaggaccactttaagtgaggatattctgtactgttgaagcctgaaggtattacaatacaaattacaaacgac |
40494073 |
T |
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| Q |
608 |
caccccactttactttacaggccgacagacatga |
641 |
Q |
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| T |
40494072 |
caccccactttactttacaggccgacagacatga |
40494039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 40482584 - 40482552
Alignment:
| Q |
578 |
gaaggtattacaatacaaattacaaacgaccac |
610 |
Q |
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| T |
40482584 |
gaaggtattacaatacaaattacaaacgaccac |
40482552 |
T |
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