View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4723-Insertion-6 (Length: 614)
Name: NF4723-Insertion-6
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Complemental strand, 27509454 - 27508853
Alignment:
| Q |
7 |
aaatctaactgaaactgagagaaattataaataaaaatatctaccaacatgattaataatatttcagtaaaaagcaatgttatccttattaaagctgcat |
106 |
Q |
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| T |
27509454 |
aaatctaactgaaactgagagaaattataaataaaaatatctaccaacatgattaata---tttcagtaaaaagcaatgttatccttattaaagctgcat |
27509358 |
T |
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| Q |
107 |
ttgcgtcaaaaaatatccttattaaggctgcatcaattttatttagtgaagatcttaagaacagttatgcatttgcatgcctcacacgttaataattcaa |
206 |
Q |
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| T |
27509357 |
ttgcgtcaaaaaatatccttattaaggctgcatcaattttagttagtgaagatcttaagaacagttatgcatttgcatgcctcacacgttaataattcaa |
27509258 |
T |
|
| Q |
207 |
ctttattagtagtattttggattgtagtcctcattcactggtctcatttccattgct------------gaatctctcgttcgtgctaaatttcagtaac |
294 |
Q |
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| T |
27509257 |
ctttattagtagtattttggattgtagtcctcattcactggtctcatttccattgctttattgcttgctgaatctctcgttcgtgctaaatttcagtaac |
27509158 |
T |
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| Q |
295 |
tgttcagacatataatgatgaatgatgaaaaacactagccatgtttttccataaactaggttcttttgtctttattcggtctctctttacatacaaccat |
394 |
Q |
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| T |
27509157 |
tgttcag-cacataatgatgaatgatgaaaaacactagccatgtttttccataaaataggttcttttgtctttattcggtctctctttacatacaaccat |
27509059 |
T |
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| Q |
395 |
agctactaattttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatagcacaagactttaaaatgccataaaataaac |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27509058 |
agctactaattttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatagcacaagactttaaaatgccataaaataaac |
27508959 |
T |
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| Q |
495 |
tgaacaaaattatttaattaattaaccaaatgatgaagaacttacaacattaagaaccctaactagctagctagcttgatcttgtccattaattttccac |
594 |
Q |
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| T |
27508958 |
tgaacaaaattatttaattaattaaccaaatgatgaagaacttacaacattaagaaccctaactagctagctagcttgatcttgtccattaattttccat |
27508859 |
T |
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| Q |
595 |
actaca |
600 |
Q |
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|||||| |
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| T |
27508858 |
actaca |
27508853 |
T |
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