View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4723-Insertion-8 (Length: 551)

Name: NF4723-Insertion-8
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4723-Insertion-8
NF4723-Insertion-8
[»] chr4 (37 HSPs)
chr4 (133-370)||(40059369-40059608)
chr4 (372-551)||(20129290-20129469)
chr4 (372-548)||(25930688-25930864)
chr4 (371-551)||(34407292-34407472)
chr4 (372-551)||(26439287-26439466)
chr4 (8-146)||(40059631-40059769)
chr4 (372-551)||(13012168-13012347)
chr4 (372-551)||(47500753-47500932)
chr4 (371-548)||(29319716-29319893)
chr4 (371-551)||(43355883-43356063)
chr4 (376-548)||(36382357-36382528)
chr4 (372-547)||(43143596-43143771)
chr4 (399-547)||(42333788-42333936)
chr4 (399-548)||(3292907-3293056)
chr4 (375-547)||(17511245-17511417)
chr4 (392-548)||(6690246-6690402)
chr4 (392-548)||(30216753-30216909)
chr4 (375-548)||(40528996-40529171)
chr4 (399-548)||(50205088-50205237)
chr4 (394-548)||(48989330-48989484)
chr4 (375-541)||(10352902-10353068)
chr4 (399-548)||(29995994-29996143)
chr4 (411-548)||(44156670-44156807)
chr4 (375-548)||(6235515-6235676)
chr4 (400-543)||(30077647-30077790)
chr4 (416-547)||(35545977-35546108)
chr4 (392-546)||(26448053-26448206)
chr4 (413-547)||(28877262-28877396)
chr4 (427-546)||(1817752-1817871)
chr4 (411-489)||(48129985-48130063)
chr4 (470-547)||(13392893-13392970)
chr4 (470-547)||(13396032-13396109)
chr4 (394-518)||(30109958-30110084)
chr4 (375-477)||(27363344-27363446)
chr4 (411-492)||(45194195-45194276)
chr4 (417-485)||(6254569-6254637)
chr4 (372-433)||(7769308-7769369)
[»] chr3 (20 HSPs)
chr3 (372-551)||(6269434-6269613)
chr3 (371-551)||(22968452-22968632)
chr3 (372-551)||(19390126-19390305)
chr3 (372-551)||(39771770-39771949)
chr3 (376-547)||(34084134-34084305)
chr3 (372-548)||(11018223-11018399)
chr3 (392-548)||(45182981-45183137)
chr3 (392-548)||(6930905-6931061)
chr3 (411-548)||(27935197-27935334)
chr3 (375-548)||(40081752-40081922)
chr3 (370-547)||(6503581-6503758)
chr3 (399-543)||(19565517-19565661)
chr3 (392-548)||(33040953-33041109)
chr3 (400-543)||(45335883-45336025)
chr3 (392-548)||(35514266-35514418)
chr3 (407-518)||(5135284-5135397)
chr3 (201-295)||(52999745-52999838)
chr3 (376-449)||(22922141-22922214)
chr3 (206-301)||(20631886-20631981)
chr3 (512-548)||(22922215-22922251)
[»] chr2 (22 HSPs)
chr2 (372-551)||(41251642-41251821)
chr2 (372-551)||(17445049-17445226)
chr2 (372-548)||(42439966-42440142)
chr2 (371-548)||(35962694-35962871)
chr2 (372-551)||(6403812-6403991)
chr2 (372-548)||(18981597-18981772)
chr2 (372-548)||(32127152-32127328)
chr2 (372-529)||(2958131-2958287)
chr2 (376-548)||(31581633-31581805)
chr2 (372-548)||(16405580-16405756)
chr2 (392-548)||(45418583-45418739)
chr2 (399-548)||(771006-771155)
chr2 (411-548)||(12756848-12756985)
chr2 (392-548)||(44084614-44084770)
chr2 (392-548)||(8147351-8147508)
chr2 (414-548)||(8059344-8059478)
chr2 (417-548)||(2285887-2286018)
chr2 (411-548)||(26162713-26162847)
chr2 (416-518)||(4555250-4555354)
chr2 (392-500)||(26237957-26238065)
chr2 (401-518)||(7072589-7072710)
chr2 (407-467)||(34905964-34906024)
[»] scaffold0069 (1 HSPs)
scaffold0069 (372-551)||(17822-18001)
[»] chr7 (20 HSPs)
chr7 (372-551)||(14777115-14777294)
chr7 (372-548)||(5555467-5555643)
chr7 (372-548)||(3114107-3114283)
chr7 (376-548)||(8394109-8394281)
chr7 (376-548)||(36630800-36630972)
chr7 (392-548)||(37002155-37002311)
chr7 (407-548)||(40920014-40920155)
chr7 (392-548)||(8867742-8867898)
chr7 (392-540)||(34389075-34389223)
chr7 (401-548)||(35090177-35090324)
chr7 (407-548)||(38638247-38638388)
chr7 (412-548)||(33685584-33685720)
chr7 (392-548)||(43184479-43184635)
chr7 (399-548)||(26624752-26624902)
chr7 (411-548)||(36658200-36658337)
chr7 (392-548)||(7002725-7002881)
chr7 (392-548)||(7048596-7048752)
chr7 (451-518)||(10868514-10868583)
chr7 (379-467)||(26502797-26502885)
chr7 (379-467)||(26589829-26589917)
[»] chr5 (23 HSPs)
chr5 (372-551)||(36293629-36293808)
chr5 (372-551)||(39434676-39434855)
chr5 (375-548)||(10033910-10034083)
chr5 (375-548)||(13817960-13818133)
chr5 (372-551)||(26283326-26283505)
chr5 (372-548)||(39657517-39657693)
chr5 (411-550)||(16155016-16155155)
chr5 (376-550)||(1776385-1776559)
chr5 (422-548)||(16333887-16334013)
chr5 (392-548)||(17332562-17332718)
chr5 (399-550)||(12278869-12279020)
chr5 (379-550)||(19985926-19986097)
chr5 (411-548)||(33430340-33430477)
chr5 (392-548)||(31680367-31680523)
chr5 (372-543)||(3155647-3155818)
chr5 (371-548)||(37254620-37254797)
chr5 (411-547)||(31501728-31501864)
chr5 (409-546)||(43068894-43069031)
chr5 (394-548)||(36291373-36291527)
chr5 (414-518)||(28801309-28801415)
chr5 (201-303)||(3158854-3158955)
chr5 (411-477)||(202658-202724)
chr5 (201-286)||(27908254-27908338)
[»] chr1 (15 HSPs)
chr1 (369-551)||(26144232-26144414)
chr1 (372-548)||(7433425-7433601)
chr1 (375-548)||(42310952-42311125)
chr1 (379-550)||(32982065-32982236)
chr1 (371-548)||(35907531-35907708)
chr1 (400-548)||(321388-321536)
chr1 (412-548)||(3829004-3829139)
chr1 (411-548)||(17445332-17445469)
chr1 (372-498)||(23313218-23313345)
chr1 (375-518)||(41972314-41972458)
chr1 (392-518)||(33489687-33489815)
chr1 (201-307)||(31649508-31649614)
chr1 (408-477)||(35951427-35951496)
chr1 (411-461)||(48901203-48901253)
chr1 (201-307)||(13197904-13198009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (371-551)||(480465-480645)
[»] chr6 (12 HSPs)
chr6 (372-551)||(398597-398776)
chr6 (371-548)||(34948769-34948946)
chr6 (372-548)||(13837801-13837977)
chr6 (392-548)||(28996730-28996886)
chr6 (392-548)||(18339106-18339262)
chr6 (411-546)||(33229349-33229484)
chr6 (411-543)||(29743302-29743434)
chr6 (411-488)||(31028435-31028512)
chr6 (411-477)||(24697899-24697965)
chr6 (420-477)||(24695515-24695572)
chr6 (420-467)||(24072576-24072623)
chr6 (411-467)||(3050098-3050154)
[»] scaffold2142 (1 HSPs)
scaffold2142 (372-551)||(502-681)
[»] chr8 (15 HSPs)
chr8 (375-548)||(29728397-29728570)
chr8 (376-548)||(15838270-15838441)
chr8 (372-551)||(39914495-39914673)
chr8 (375-548)||(3648805-3648978)
chr8 (399-548)||(16788036-16788185)
chr8 (372-547)||(34136837-34137012)
chr8 (392-547)||(4404008-4404163)
chr8 (392-548)||(23402108-23402264)
chr8 (414-546)||(9877242-9877374)
chr8 (400-546)||(36408559-36408705)
chr8 (392-547)||(2729208-2729363)
chr8 (411-518)||(3435288-3435397)
chr8 (424-548)||(42230971-42231093)
chr8 (415-485)||(40470567-40470637)
chr8 (392-477)||(10397122-10397207)
[»] scaffold0041 (1 HSPs)
scaffold0041 (407-548)||(52940-53081)
[»] scaffold0502 (1 HSPs)
scaffold0502 (392-548)||(5230-5386)
[»] scaffold0154 (1 HSPs)
scaffold0154 (411-550)||(31499-31638)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 133 - 370
Target Start/End: Complemental strand, 40059608 - 40059369
Alignment:
Q  133 tgtattcctgatatgttaattatgaaaataaaaatataaagtggtttattgtaacttttgttaaatgagtttgaatggtgtttccaaaccttagaatata 232  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  40059608 tgtattcctgatatgttaattatgaaaataaaaatattaagtggtttattgtgccttttgttaaatgagtttgaatggtgtttccaaaccttagaatata 40059509  T
Q  233 ccccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtttgtc--tttccacacttaaaactctgttgaaa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  40059508 ccccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtttgtctttttccacacttaaaactctgttgaaa 40059409  T
Q  331 ttttctttttatagacatggtcgcgcatttgcacctgggc 370  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40059408 ttttctttttatagacatggtcgcgcatttgcacctgggc 40059369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 20129290 - 20129469
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 20129389  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  20129390 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagt 20129469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 25930688 - 25930864
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| | |||||| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacattta 25930787  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  25930788 caaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 25930864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 371 - 551
Target Start/End: Complemental strand, 34407472 - 34407292
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||| ||||||| ||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34407472 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattt 34407373  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||    
T  34407372 ataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagt 34407292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 26439466 - 26439287
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 26439367  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||    
T  26439366 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagt 26439287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 40059769 - 40059631
Alignment:
Q  8 attccgacctttaattcagaagaaaggatgtttgtcctaaatattgtctagatgttttgtcaacatgttaggtcacttcaatttgtggtcttgatatatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40059769 attccgacctttaattcagaagaaaggatgtttgtcctaaatattgtctagatgttttgtcaacatgttaggtcacttcaatttgtggtcttgatatatt 40059670  T
Q  108 aattgcgaaaataaaacaatagatgtgtattcctgatat 146  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40059669 aattgcgaaaataaaacaatagatgtgtattcctgatat 40059631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 13012168 - 13012347
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacattta 13012267  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13012268 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 13012347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 47500753 - 47500932
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 47500852  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
      |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47500853 tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 47500932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 371 - 548
Target Start/End: Complemental strand, 29319893 - 29319716
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||||||||| ||| ||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29319893 gcatgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacattt 29319794  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||| |||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||    
T  29319793 acaaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgac 29319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 43355883 - 43356063
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||| ||||||| ||||| || ||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43355883 gcatgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattt 43355982  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||    
T  43355983 ataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagt 43356063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 376 - 548
Target Start/End: Complemental strand, 36382528 - 36382357
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| ||||||| |||||||| || |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||| ||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aa 36382430  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  36382429 aagaaaaatttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 36382357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 372 - 547
Target Start/End: Complemental strand, 43143771 - 43143596
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||  |||||  | |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 43143672  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||    
T  43143671 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 42333936 - 42333788
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42333936 ccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaa 42333837  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||| ||||||| |||||||||| ||||||||||||||||||| |||||    
T  42333836 aattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 3293056 - 3292907
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3293056 ccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaa 3292957  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  3292956 aattctcacacgcaaataggtctcggaattttatttagcacactattgac 3292907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 375 - 547
Target Start/End: Complemental strand, 17511417 - 17511245
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||| || ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17511417 gggcggttctaccgtatggcgac-cctggcggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 17511319  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttgg-aattttatttagcacactattga 547  Q
    ||||||||||||||||||| |||||||| | ||||| ||||||||||||| |||||||||||||||| ||||||    
T  17511318 aaagaaaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattga 17511245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 6690402 - 6690246
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 6690303  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    | ||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||    
T  6690302 aactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgac 6690246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 30216909 - 30216753
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 30216810  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||| | |||||| ||| ||||||||||||||||||||||||||    
T  30216809 atctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgac 30216753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 40528996 - 40529171
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcg--gccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttac 472  Q
    ||||||||||||||| ||||||| | |||||  | ||||||| ||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||    
T  40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttac 40529095  T
Q  473 aaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||| |||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  40529096 aaaaagaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgac 40529171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 50205237 - 50205088
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || ||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  50205237 ccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaatctgaa 50205138  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  50205137 aattctcacacgcaaataggtcttggaattttatttagcacactattgac 50205088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 48989330 - 48989484
Alignment:
Q  394 cgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaat 493  Q
    ||||||||||||| |  ||||| |||||||||||||||||||||||| || |||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  48989330 cgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaat 48989429  T
Q  494 ctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||    
T  48989430 ctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgac 48989484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 375 - 541
Target Start/End: Complemental strand, 10353068 - 10352902
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||  |||||  |||||| || ||||| || |||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaa 10352969  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacac 541  Q
    || ||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||    
T  10352968 aaggaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 29996143 - 29995994
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||| ||| ||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29996143 ccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaa 29996044  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| |  |||| |||||| ||| ||||||||||| ||||||||||||||    
T  29996043 aattcttgcacgcaaatagttctcggaattttattaagcacactattgac 29995994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 44156670 - 44156807
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||| || ||||    
T  44156670 ccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctcacg 44156769  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| ||||||||||||||||||||||||||    
T  44156770 caaataggtctcggaattttatttagcacactattgac 44156807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 6235515 - 6235676
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| |||||| || |||||| ||  ||||||||| |||||||||||||||            ||||||| ||||||||||||||||||    
T  6235515 gggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgcac------------ccaaaagtccattaacacatttacaa 6235602  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  6235603 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 6235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 400 - 543
Target Start/End: Complemental strand, 30077790 - 30077647
Alignment:
Q  400 cgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaa 499  Q
    ||||||| || || ||||| |||||||| ||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  30077790 cgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaatctgaaa 30077691  T
Q  500 attatcacacgtaaataggtcttggaattttatttagcacacta 543  Q
    ||| | ||||  |||||||||||| |||||||||||||||||||    
T  30077690 atttttacacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 547
Target Start/End: Original strand, 35545977 - 35546108
Alignment:
Q  416 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaat 515  Q
    ||||||||| ||||||||| ||| |||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  516 aggtcttggaattttatttagcacactattga 547  Q
     |||||  ||||||||||||||||||||||||    
T  35546077 gggtctctgaattttatttagcacactattga 35546108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 392 - 546
Target Start/End: Original strand, 26448053 - 26448206
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||||||| |||  ||||||| ||||||||||||||||||||||||| |   |||||||||| ||||||||||| ||||||||| |||||||||||||    
T  26448053 ggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggca 26448151  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattg 546  Q
    ||||||||||| ||| ||  |||||||| | ||||||||||||||||||||||||    
T  26448152 atctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 413 - 547
Target Start/End: Complemental strand, 28877396 - 28877262
Alignment:
Q  413 gggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgta 512  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||  ||||||||  ||| ||||||||||||||||| ||||| |||||| ||||||| |    
T  28877396 gggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgca 28877297  T
Q  513 aataggtcttggaattttatttagcacactattga 547  Q
    ||||||||| |||||||||||||||||||||||||    
T  28877296 aataggtctcggaattttatttagcacactattga 28877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 427 - 546
Target Start/End: Original strand, 1817752 - 1817871
Alignment:
Q  427 atttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaa 526  Q
    ||||||||||||||||  ||| ||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||| | ||||| |||||||||| ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  527 ttttatttagcacactattg 546  Q
    ||||||||| ||||||||||    
T  1817852 ttttatttaacacactattg 1817871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 411 - 489
Target Start/End: Original strand, 48129985 - 48130063
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttggg 489  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  48129985 ccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg 48130063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  470 tacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||| | |||||||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  470 tacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||| | |||||||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 394 - 518
Target Start/End: Original strand, 30109958 - 30110084
Alignment:
Q  394 cgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--a 491  Q
    |||| |||| ||| || |||| |||||||||||||||||||||||||||| ||| || |||| ||||||||||| |||||||||||||||||||| |  |    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaa 30110057  T
Q  492 atctgaaaattatcacacgtaaatagg 518  Q
    || |||||| | ||||||| |||||||    
T  30110058 atatgaaaaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 27363344 - 27363446
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    |||||||| |||||| |||||||  ||||||| || ||||||||||||||   |||||||| ||||| | ||||||||||||||||||||||| ||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttacaa 27363443  T
Q  475 aaa 477  Q
    |||    
T  27363444 aaa 27363446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 45194195 - 45194276
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 492  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||  ||||||||    
T  45194195 ccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaatattgggcaa 45194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 6254569 - 6254637
Alignment:
Q  417 tcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatt 485  Q
    |||||||||||||||||||||||| || ||||||||||| | ||||||||| || |||||| |||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 7769308 - 7769369
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttg 433  Q
    |||||||||||  |||||  |||||| || ||||| || |||||||||||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 6269613 - 6269434
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||| ||||  |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 6269514  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6269513 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagt 6269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 371 - 551
Target Start/End: Complemental strand, 22968632 - 22968452
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22968632 gcatgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacattt 22968533  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  22968532 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagt 22968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 19390126 - 19390305
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacattta 19390225  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19390226 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagt 19390305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 39771770 - 39771949
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 39771869  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||    
T  39771870 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagt 39771949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 376 - 547
Target Start/End: Complemental strand, 34084305 - 34084134
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaa 34084206  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34084205 aagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattga 34084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 372 - 548
Target Start/End: Complemental strand, 11018399 - 11018223
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||  |||||  ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 11018300  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||| ||||||    
T  11018299 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgac 11018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 45182981 - 45183137
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45183080  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||    
T  45183081 atctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgac 45183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 6931061 - 6930905
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||| ||| || |||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggca 6930962  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  6930961 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgac 6930905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 27935197 - 27935334
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |||    
T  27935197 ccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacg 27935296  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| |||||||||||||||| |||||||||    
T  27935297 aaaataggtctcggaattttatttagcatactattgac 27935334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 40081922 - 40081752
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||||| ||  || || ||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  40081922 gggcggttctaccgtatggcgactctgga-ggtcgcccgggctcgatcgataatttttgaacattagactcaacc-aaaagctcattaacacatttacaa 40081825  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||| |||||||| ||||||| |||||| |||||| ||||| |||||||||||||||||    
T  40081824 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgac 40081752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 370 - 547
Target Start/End: Complemental strand, 6503758 - 6503581
Alignment:
Q  370 cgcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatt 469  Q
    |||||||||||||  |||||  |||||| |||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||| |    
T  6503758 cgcatgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacact 6503659  T
Q  470 tacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||||||||||||||||  |||||||||||||| ||||| | |||||||||| ||| ||||||||||||||| |||||    
T  6503658 tacaaaaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattga 6503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 399 - 543
Target Start/End: Complemental strand, 19565661 - 19565517
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || ||||| || |||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||| |||||||||    
T  19565661 ccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggacaatctgaa 19565562  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacacta 543  Q
    |||| | ||||| |||||||||| |||||||||||||||||||||    
T  19565561 aattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 33040953 - 33041109
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| ||  |||||||||| ||||||||||||| ||||||| ||||||||||||  ||||||||| |||||||||||||||||||  ||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaaca 33041052  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  33041053 atttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgac 33041109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 400 - 543
Target Start/End: Original strand, 45335883 - 45336025
Alignment:
Q  400 cgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaa 499  Q
    ||||||| || |||| ||| ||||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  45335883 cgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtc-attaacacatttacaaaaagaaaaatctgggcaatctgaaa 45335981  T
Q  500 attatcacacgtaaataggtcttggaattttatttagcacacta 543  Q
    ||| | ||||| ||||||||||||||||||||||||||||||||    
T  45335982 attcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 35514266 - 35514418
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||| ||| |||||||||||||||||||||||| ||| | ||||  ||||||||||| |||||||||||    ||||||||||||||||| ||    
T  35514266 ggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca----caaaaagaaaaatttggaca 35514361  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || |||||||| |||| || |||||||||| |||||||||||| |||||||||||||    
T  35514362 atatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgac 35514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 5135284 - 5135397
Alignment:
Q  407 ccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattat 504  Q
    |||||| |||||||||||| ||||||| ||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| |  |||| ||||||| |    
T  5135284 ccgtccaggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattct 5135383  T
Q  505 cacacgtaaatagg 518  Q
    |||||  |||||||    
T  5135384 cacacacaaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 52999838 - 52999745
Alignment:
Q  201 gtttgaatggtgtttccaaaccttagaatataccccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctct 295  Q
    ||||||||||||||||||||||||||||| || |||||||| | || | |||||||  ||||||| ||| ||||||||| | |||||| ||||||    
T  52999838 gtttgaatggtgtttccaaaccttagaatttatcccaaaagtcctcgatctttagcccattgatttcct-aaaggttccctattttgatctctct 52999745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 22922141 - 22922214
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacc 449  Q
    |||||||| ||||| ||||||  |||||||| ||  |||||||||||||| |||||||||||||| ||||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaactcaacc 22922214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 20631981 - 20631886
Alignment:
Q  206 aatggtgtttccaaaccttagaatataccccaaaag-ccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggttt 301  Q
    |||| |||||||||||| |||||| ||||||||||  || |||| | |||||  ||| ||| |||||| |||||| |||||||| ||||||||||||    
T  20631981 aatgatgtttccaaaccctagaatttaccccaaaaatccctcaaccattagcccattcatttcctaaa-ggttccctcttttgatctctctaggttt 20631886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 22922215 - 22922251
Alignment:
Q  512 aaataggtcttggaattttatttagcacactattgac 548  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  22922215 aaatagatcttggaattttatttaacacactattgac 22922251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 41251821 - 41251642
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 41251722  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251721 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagt 41251642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 17445226 - 17445049
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    ||||||||||||||||||||||||||  ||||||| || ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacattta 17445129  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445128 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagt 17445049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 42439966 - 42440142
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacattta 42440065  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  42440066 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgac 42440142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 371 - 548
Target Start/End: Original strand, 35962694 - 35962871
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  35962694 gcatgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacattt 35962793  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  35962794 acaaaaagaaaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 35962871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 6403991 - 6403812
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta 6403892  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6403891 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 6403812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 18981597 - 18981772
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  18981597 catgggcggttctaccgtatggcgac-ccgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacattta 18981695  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  18981696 caaaaagaaaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgac 18981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 372 - 548
Target Start/End: Complemental strand, 32127328 - 32127152
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||| ||| ||||||| |||||||| || |||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacattta 32127229  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  32127228 caaaaagaaaaatttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgac 32127152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 372 - 529
Target Start/End: Complemental strand, 2958287 - 2958131
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacattta 2958189  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattt 529  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  2958188 caaagagaaaaatttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 376 - 548
Target Start/End: Complemental strand, 31581805 - 31581633
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    ||||||||||| || |||||||  ||||||| || || ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaa 31581706  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  31581705 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 31581633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 16405580 - 16405756
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||| | ||| ||| | |||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattta 16405679  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  16405680 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgac 16405756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 45418583 - 45418739
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45418682  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||    
T  45418683 atctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgac 45418739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 399 - 548
Target Start/End: Original strand, 771006 - 771155
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  771006 ccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaa 771105  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| ||||||| |||||||||| |||| ||||||||||||| |||||||    
T  771106 aattctcacacgcaaataggtctcggaactttatttagcacattattgac 771155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 411 - 548
Target Start/End: Complemental strand, 12756985 - 12756848
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  12756985 ccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 12756886  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     ||||| |||| ||||||||||||||||||||||||||    
T  12756885 caaataagtctcggaattttatttagcacactattgac 12756848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 44084770 - 44084614
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||| | || |||||||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggca 44084671  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||| ||| ||||||||||  |||||||||||||||||||||||||    
T  44084670 atctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgac 44084614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 8147351 - 8147508
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||| |||||||||||||| |||| |||||| | ||||||||| |||||||||||||||||||||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggca 8147450  T
Q  492 atctg-aaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||| |||||| ||||||| |||||| ||| ||||||||||||| ||||||||||||    
T  8147451 atctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgac 8147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 414 - 548
Target Start/End: Complemental strand, 8059478 - 8059344
Alignment:
Q  414 ggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaa 513  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||| ||||||  ||    
T  8059478 ggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattctcacacacaa 8059379  T
Q  514 ataggtcttggaattttatttagcacactattgac 548  Q
    || ||||| ||||||||||||||||||| ||||||    
T  8059378 atcggtctcggaattttatttagcacacaattgac 8059344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 417 - 548
Target Start/End: Original strand, 2285887 - 2286018
Alignment:
Q  417 tcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaata 516  Q
    |||||||||||||||||||||||| |  ||||| ||||| | |||||||||||||| ||| |||||||||| |||||||||||||| ||||||| |||||    
T  2285887 tcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaaattgtcacacgcaaata 2285986  T
Q  517 ggtcttggaattttatttagcacactattgac 548  Q
    ||| ||||||||||||||||||||||||||||    
T  2285987 ggttttggaattttatttagcacactattgac 2286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 548
Target Start/End: Complemental strand, 26162847 - 26162713
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||||  |||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||     
T  26162847 ccgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaaca 26162748  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| |||   |||||||||||| |||||||    
T  26162747 caaataggtctcgga---ttatttagcacattattgac 26162713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 416 - 518
Target Start/End: Complemental strand, 4555354 - 4555250
Alignment:
Q  416 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattatcacacgtaa 513  Q
    ||||||||||||||||||||||| | || |||||||||||| | |||||||| |||||||||||||| |||||||  |||||||||||| ||||||||||    
T  4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  514 atagg 518  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 500
Target Start/End: Original strand, 26237957 - 26238065
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc- 490  Q
    |||||| |||||||| || |||||||||||||||| |||||||| ||||||  ||| ||||||| ||||||||||| ||||||||||||||||||||||     
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggca 26238055  T
Q  491 aatctgaaaa 500  Q
    ||||||||||    
T  26238056 aatctgaaaa 26238065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 401 - 518
Target Start/End: Complemental strand, 7072710 - 7072589
Alignment:
Q  401 gggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaa--cacatttacaaaaagaaaaatttgggcaa--tctg 496  Q
    |||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||||||||  |||| ||| ||||||||||  |||| |||  ||||    
T  7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctg 7072611  T
Q  497 aaaattatcacacgtaaatagg 518  Q
    |||||| || ||||||||||||    
T  7072610 aaaattctcgcacgtaaatagg 7072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 34905964 - 34906024
Alignment:
Q  407 ccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 467  Q
    |||| |||||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  34905964 ccgttcgggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacaca 34906024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 17822 - 18001
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 17921  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  17922 caaaaagaaaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagt 18001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 14777294 - 14777115
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||| ||||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacattta 14777195  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14777194 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagt 14777115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 5555467 - 5555643
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcattta 5555566  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  5555567 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 5555643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 372 - 548
Target Start/End: Complemental strand, 3114283 - 3114107
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||| ||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 3114184  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  3114183 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 3114107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 376 - 548
Target Start/End: Original strand, 8394109 - 8394281
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 8394208  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8394209 aggaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 8394281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 376 - 548
Target Start/End: Original strand, 36630800 - 36630972
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 36630899  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  36630900 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgac 36630972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 37002311 - 37002155
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37002212  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  37002211 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgac 37002155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 407 - 548
Target Start/End: Complemental strand, 40920155 - 40920014
Alignment:
Q  407 ccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatca 506  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||    
T  40920155 ccgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctca 40920056  T
Q  507 cacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || | |||||||||| ||||||||||||||||||||||||||    
T  40920055 catgcaaataggtctcggaattttatttagcacactattgac 40920014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 8867898 - 8867742
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || ||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggca 8867799  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  8867798 atcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgac 8867742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 540
Target Start/End: Complemental strand, 34389223 - 34389075
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 34389124  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcaca 540  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  34389123 atctgaaaattctcacacgcaaataggtctcggaattttatttagcaca 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 401 - 548
Target Start/End: Original strand, 35090177 - 35090324
Alignment:
Q  401 gggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaa 500  Q
    |||||| || |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  501 ttatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || ||||||| |||||||||| ||||||||||||||||||||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgac 35090324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 407 - 548
Target Start/End: Complemental strand, 38638388 - 38638247
Alignment:
Q  407 ccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatca 506  Q
    ||||||| ||||||| ||||||||||||||||||||  ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||    
T  38638388 ccgtccgagctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 38638289  T
Q  507 cacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  38638288 cacgcaaataggtctcggaattttatttagcacactattgac 38638247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 412 - 548
Target Start/End: Original strand, 33685584 - 33685720
Alignment:
Q  412 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgt 511  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||     
T  33685584 cgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacgc 33685683  T
Q  512 aaataggtcttggaattttatttagcacactattgac 548  Q
    ||||| ||||   ||||||||||||||||||||||||    
T  33685684 aaatatgtctcataattttatttagcacactattgac 33685720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 43184635 - 43184479
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    ||||| ||||||||| ||  ||||||||||||||||||||| | ||| ||||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  43184635 ggcgattccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggca 43184536  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||    
T  43184535 atctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgac 43184479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 399 - 548
Target Start/End: Original strand, 26624752 - 26624902
Alignment:
Q  399 ccgggcggccgtccgggctcgat-cgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctga 497  Q
    |||||||| || | ||||||||| |||||||||||||| ||||||| ||| |||||||   ||||||||| |||||||||||||||||||||||||||||    
T  26624752 ccgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatctga 26624851  T
Q  498 aaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  26624852 aaattctcacacgcaaataggtctcggaattttatttagcacactattgac 26624902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 36658200 - 36658337
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    |||| |||||||||||||||||||||||| ||| ||||| ||||||| ||||||| | | ||||||| |||||||||||||||||||||||| |||||||    
T  36658200 ccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacacg 36658299  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| ||||||||||||||||||||||||||    
T  36658300 caaataggtctcggaattttatttagcacactattgac 36658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 7002725 - 7002881
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| ||| |||| || ||||||||||||||  ||||||  |||||| || ||||||||||||| |||||||||  |||||||| |||||||||| ||    
T  7002725 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7002824  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| |||||| ||||||| |||||||||  ||||||||||||||||||||||||||    
T  7002825 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgac 7002881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 7048596 - 7048752
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| ||| |||| || ||||||||||||||  ||||||  |||||| || ||||||||||||| |||||||||  |||||||| |||||||||| ||    
T  7048596 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7048695  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||| |||||| ||||||| |||||||||  ||||||||||||||||||||||||||    
T  7048696 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgac 7048752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 518
Target Start/End: Complemental strand, 10868583 - 10868514
Alignment:
Q  451 aaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattatcacacgtaaatagg 518  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| || |||||||    
T  10868583 aaaagcccattaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 26502797 - 26502885
Alignment:
Q  379 ggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 467  Q
    ||||| ||||||||||||| || ||| | || ||||||||||||||   |||||||| ||||  | |||||||||||||||||||||||    
T  26502797 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacaca 26502885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 26589917 - 26589829
Alignment:
Q  379 ggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 467  Q
    ||||| ||||||||||||| || ||| | || ||||||||||||||   |||||||| ||||  | |||||||||||||||||||||||    
T  26589917 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacaca 26589829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 36293808 - 36293629
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacattta 36293709  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  36293708 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagt 36293629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 39434676 - 39434855
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||||||||||| | |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacattta 39434775  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39434776 caaaatgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagt 39434855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 10033910 - 10034083
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||| |||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 10034009  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  10034010 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 10034083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 13817960 - 13818133
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 13818059  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  13818060 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgac 13818133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 372 - 551
Target Start/End: Complemental strand, 26283505 - 26283326
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| |||||  ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta 26283406  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26283405 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 26283326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 372 - 548
Target Start/End: Complemental strand, 39657693 - 39657517
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||  | ||||||| || | ||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39657693 catgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacattta 39657594  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  39657593 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 39657517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 411 - 550
Target Start/End: Original strand, 16155016 - 16155155
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  16155016 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacacg 16155115  T
Q  511 taaataggtcttggaattttatttagcacactattgacag 550  Q
     |||||||||||||||||||||||||||||||||||||||    
T  16155116 caaataggtcttggaattttatttagcacactattgacag 16155155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 376 - 550
Target Start/End: Complemental strand, 1776559 - 1776385
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| || |||| |||||||| || ||||||||||||||||||||||| |||||| | |||||| ||||| |||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaa 1776460  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacag 550  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  1776459 aagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacag 1776385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 422 - 548
Target Start/End: Complemental strand, 16334013 - 16333887
Alignment:
Q  422 cgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtct 521  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  522 tggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgac 16333887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 392 - 548
Target Start/End: Complemental strand, 17332718 - 17332562
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||  || ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 17332619  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  17332618 atctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgac 17332562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 399 - 550
Target Start/End: Complemental strand, 12279020 - 12278869
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || |||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||    
T  12279020 ccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggcaatctgaa 12278921  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgacag 550  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12278920 aattctcacacgcaaataggtctcggaattttatttagcacactattgacag 12278869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 379 - 550
Target Start/End: Original strand, 19985926 - 19986097
Alignment:
Q  379 ggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaag 478  Q
    |||| |||||| || ||||  ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaag 19986025  T
Q  479 aaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacag 550  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  19986026 aaaaatttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacag 19986097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 33430340 - 33430477
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  33430340 ccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 33430439  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| ||||||||||||||||||||||||||    
T  33430440 caaataggtctcggaattttatttagcacactattgac 33430477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 31680367 - 31680523
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31680466  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||    
T  31680467 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgac 31680523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 372 - 543
Target Start/End: Complemental strand, 3155818 - 3155647
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||| ||| ||||||  |||||||| ||  ||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta 3155719  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacacta 543  Q
     |||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  3155718 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 371 - 548
Target Start/End: Original strand, 37254620 - 37254797
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||  ||||   |||||| || ||||| || || |||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||    
T  37254620 gcatgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacactt 37254719  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||    
T  37254720 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgac 37254797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 411 - 547
Target Start/End: Complemental strand, 31501864 - 31501728
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||    
T  31501864 ccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgcacg 31501765  T
Q  511 taaataggtcttggaattttatttagcacactattga 547  Q
     |||||||||| | |||||||||||||||||||||||    
T  31501764 caaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 409 - 546
Target Start/End: Original strand, 43068894 - 43069031
Alignment:
Q  409 gtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcaca 508  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  43068894 gtccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttaca 43068993  T
Q  509 cgtaaataggtcttggaattttatttagcacactattg 546  Q
     ||||||| |||| ||||||||||||||||||||||||    
T  43068994 tgtaaataagtctcggaattttatttagcacactattg 43069031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 36291373 - 36291527
Alignment:
Q  394 cgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaat 493  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||||||   |||| |||||  ||||||||||||||||||||||||||||||||||||    
T  36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaat 36291472  T
Q  494 ctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || |||||||| ||||  ||||||||||  |||||||||||| ||||||||||||    
T  36291473 ctcaaaattattacacacaaataggtctcagaattttatttaacacactattgac 36291527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 28801309 - 28801415
Alignment:
Q  414 ggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttggg--caatctgaaaattatcacacgt 511  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||||||||||||||   ||| |||||||| |||||||     
T  28801309 ggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaattctcacacgc 28801408  T
Q  512 aaatagg 518  Q
    |||||||    
T  28801409 aaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 3158955 - 3158854
Alignment:
Q  201 gtttgaatggtgtttccaaaccttagaatataccccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtt 300  Q
    ||||||||||||||| |||||| || ||| ||| ||||||| | |||| ||||||| ||||||| |||  ||||||||  |||||||  |||||||||||    
T  3158955 gtttgaatggtgttttcaaaccctaaaatctactccaaaagtcctcaacctttagcttattgataccc-caaaggttcactcttttgttctctctaggtt 3158857  T
Q  301 tgt 303  Q
    |||    
T  3158856 tgt 3158854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 202658 - 202724
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaa 477  Q
    |||||||||||||||||||| || |||||||    |||||||||||||||||| ||| | |||||||    
T  202658 ccgggctcgatcgataatttgtgtacattaggtcgaacccaaaagcccattaagacactaacaaaaa 202724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 27908338 - 27908254
Alignment:
Q  201 gtttgaatggtgtttccaaaccttagaatataccccaaaagccatcaagctttagcatattgattccctaaaaggttccttctttt 286  Q
    |||||||||||||||  ||||| |||||  || ||||||| || |||| ||||||| || ||||||||| ||||||||| ||||||    
T  27908338 gtttgaatggtgttttgaaaccctagaacctatcccaaaaaccctcaacctttagcctactgattccct-aaaggttccctctttt 27908254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 369 - 551
Target Start/End: Original strand, 26144232 - 26144414
Alignment:
Q  369 gcgcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacat 468  Q
    ||||||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  26144232 gcgcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacat 26144331  T
Q  469 ttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26144332 ttataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 26144414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 7433425 - 7433601
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| |||| || |||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacattta 7433524  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| |||||||||||| |||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  7433525 caaaaagaaaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgac 7433601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 42311125 - 42310952
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||| || | ||  || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa 42311026  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||| || ||||||||    
T  42311025 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgac 42310952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 379 - 550
Target Start/End: Complemental strand, 32982236 - 32982065
Alignment:
Q  379 ggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaag 478  Q
    ||||||||||| ||||||| |||||||| ||  ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaag 32982137  T
Q  479 aaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacag 550  Q
    |||||||||| ||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||||||||    
T  32982136 aaaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacag 32982065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 371 - 548
Target Start/End: Original strand, 35907531 - 35907708
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||  ||||   ||||||  ||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||  ||| ||    
T  35907531 gcatgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacactt 35907630  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||| |||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||    
T  35907631 acaaaaagaaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgac 35907708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 400 - 548
Target Start/End: Complemental strand, 321536 - 321388
Alignment:
Q  400 cgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaa 499  Q
    ||||||| ||||||||||||||||||||||||||  |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  321536 cgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaaa 321437  T
Q  500 attatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||| ||| | | |||||||||| ||||||||||||| |||| |||||||    
T  321436 attctcatatgcaaataggtctcggaattttatttaacacattattgac 321388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 412 - 548
Target Start/End: Original strand, 3829004 - 3829139
Alignment:
Q  412 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgt 511  Q
    |||| |||||||||||||||||||||||| || |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||| |||     
T  3829004 cgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttcatacgc 3829103  T
Q  512 aaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||| |||||||||||||||||||||||||||    
T  3829104 aaataggtc-tggaattttatttagcacactattgac 3829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 411 - 548
Target Start/End: Original strand, 17445332 - 17445469
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||| |||| |||||||||| ||||||||  ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  17445332 ccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 17445431  T
Q  511 taaataggtcttggaattttatttagcacactattgac 548  Q
     |||||||||| |||||||||||||||||| |||||||    
T  17445432 caaataggtctcggaattttatttagcacattattgac 17445469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 23313218 - 23313345
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataattt-ttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    |||||||||||||||||| ||||||   |||||||  | ||||||||||| ||| |||| ||||||||||||||||||  |||||  |||||||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacattt 23313317  T
Q  471 acaaaaagaaaaatttgggcaatctgaa 498  Q
    ||||||||||||||||||||||||||||    
T  23313318 acaaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 375 - 518
Target Start/End: Complemental strand, 41972458 - 41972314
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||| |||||   ||||| |||||||| || || |||||||||||||||||||||||||||||  ||||| ||||||| ||||||||| ||||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcg-cctggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaa 41972360  T
Q  475 aaagaaaaatttgg--gcaatctgaaaattatcacacgtaaatagg 518  Q
    ||||||||||||||    |||||||||||| ||||||| |||||||    
T  41972359 aaagaaaaatttggaaaaaatctgaaaattctcacacgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 518
Target Start/End: Original strand, 33489687 - 33489815
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc- 490  Q
    |||||| |||| ||| ||| |||| | | ||||||||||||| ||||||||||||| | ||||||||||||||||| |||| |||||||||||||| ||     
T  33489687 ggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagca 33489786  T
Q  491 -aatctgaaaattatcacacgtaaatagg 518  Q
     |||||||||||| ||||||| |||||||    
T  33489787 aaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 31649614 - 31649508
Alignment:
Q  201 gtttgaatggtgtttccaaaccttagaatatacc-ccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggt 299  Q
    |||||||||||||||||||||| |||||| |||| ||||||| | |||| ||||||| |||||||| ||| || |||||| |||||||  |||| |||||    
T  31649614 gtttgaatggtgtttccaaaccctagaatttacctccaaaagtcctcaacctttagcctattgatttcct-aatggttccctcttttgttctctttaggt 31649516  T
Q  300 ttgtcttt 307  Q
    ||| ||||    
T  31649515 ttgccttt 31649508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 35951496 - 35951427
Alignment:
Q  408 cgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaa 477  Q
    |||||||||||||||||||||||||| |||||||    ||||||| |||||||||||||| | |||||||    
T  35951496 cgtccgggctcgatcgataatttttgtacattaggtcgaacccaatagcccattaacacactaacaaaaa 35951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 48901253 - 48901203
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccatt 461  Q
    ||||| |||||||||||||| |||||||||| | |||||||||||||||||    
T  48901253 ccggggtcgatcgataatttatgcacattaggcccaacccaaaagcccatt 48901203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 13198009 - 13197904
Alignment:
Q  201 gtttgaatggtgtttccaaaccttagaatataccccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtt 300  Q
    |||||||||||||||||||| | || ||| |  ||||||| || |||| ||||||  |||| ||||| ||||||||||| |||||||  |||| ||||||    
T  13198009 gtttgaatggtgtttccaaatcctataatctctcccaaaatcc-tcaatctttagtttatttattccttaaaaggttccctcttttggtctctataggtt 13197911  T
Q  301 tgtcttt 307  Q
    || ||||    
T  13197910 tgccttt 13197904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 371 - 551
Target Start/End: Complemental strand, 480645 - 480465
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  480645 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattt 480546  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
    | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  480545 ataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 480465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 398597 - 398776
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 398696  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  398697 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 398776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 371 - 548
Target Start/End: Complemental strand, 34948946 - 34948769
Alignment:
Q  371 gcatgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 470  Q
    ||||||||||||||||||| ||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34948946 gcatgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 34948847  T
Q  471 acaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||| ||||| ||||||||||||||||||||||||    
T  34948846 acaaaaagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgac 34948769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 372 - 548
Target Start/End: Original strand, 13837801 - 13837977
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||||||||| ||||||| |||||||  ||  |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacattta 13837900  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  13837901 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 13837977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 28996730 - 28996886
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || ||| |||||||||||||||||||| |||||||| ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggca 28996829  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  28996830 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgac 28996886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 18339106 - 18339262
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||| |||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||    
T  18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgac 18339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 411 - 546
Target Start/End: Complemental strand, 33229484 - 33229349
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||    
T  33229484 ccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttacacg 33229385  T
Q  511 taaataggtcttggaattttatttagcacactattg 546  Q
    |||||| |||| || |||||||||||||||||||||    
T  33229384 taaataagtctcgggattttatttagcacactattg 33229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 411 - 543
Target Start/End: Original strand, 29743302 - 29743434
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||  |||||||||||||||| |||||||||||||||||||||||||||| | |||||    
T  29743302 ccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaaattcttacacg 29743401  T
Q  511 taaataggtcttggaattttatttagcacacta 543  Q
     |||||||||| |||||||||||||||||||||    
T  29743402 caaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 31028512 - 31028435
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgg 488  Q
    |||| |||||||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||| ||| |||||    
T  31028512 ccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 24697965 - 24697899
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaa 477  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||    
T  24697965 ccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 24695515 - 24695572
Alignment:
Q  420 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaa 477  Q
    |||||| ||||||  ||||||| ||||||||||||||||||||||||| |||||||||    
T  24695515 atcgatcattttttaacattaggctcaacccaaaagcccattaacacacttacaaaaa 24695572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 24072576 - 24072623
Alignment:
Q  420 atcgataatttttgcacattagactcaacccaaaagcccattaacaca 467  Q
    |||||||||||||||||||||||   ||||||||| ||||||||||||    
T  24072576 atcgataatttttgcacattagatcgaacccaaaaacccattaacaca 24072623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 3050098 - 3050154
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 467  Q
    |||||||| ||| ||||||||||||||||   | ||||| |||||||||||||||||    
T  3050098 ccgggctcaatcaataatttttgcacattgagcgcaaccgaaaagcccattaacaca 3050154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 502 - 681
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||||||||| ||||||| ||||  |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 601  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  602 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagt 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 29728570 - 29728397
Alignment:
Q  375 gggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 474  Q
    ||||||||||||||| ||||||| |||| ||| || ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa 29728471  T
Q  475 aaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||    
T  29728470 aaagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgac 29728397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 376 - 548
Target Start/End: Original strand, 15838270 - 15838441
Alignment:
Q  376 ggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaa 475  Q
    |||||||||||||| ||||||| |||||||| |  ||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 15838369  T
Q  476 aagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    | ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  15838370 a-gaaaaatttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgac 15838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 372 - 551
Target Start/End: Original strand, 39914495 - 39914673
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    ||||| |||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 39914594  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgacagt 551  Q
     ||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  39914595 taaaaa-aaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagt 39914673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 375 - 548
Target Start/End: Complemental strand, 3648978 - 3648805
Alignment:
Q  375 gggcggttctaccgtgtggcgactccggg-cggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttaca 473  Q
    ||||||||||||||| |||||| |||||| | | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3648978 gggcggttctaccgtatggcga-tccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttaca 3648880  T
Q  474 aaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||| ||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||    
T  3648879 aaaagaaaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgac 3648805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 16788185 - 16788036
Alignment:
Q  399 ccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 498  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  16788185 ccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaa 16788086  T
Q  499 aattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || | ||||||| |||||||||||||||||||||||||||||||||||||    
T  16788085 aactctcacacgcaaataggtcttggaattttatttagcacactattgac 16788036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 372 - 547
Target Start/End: Complemental strand, 34137012 - 34136837
Alignment:
Q  372 catgggcggttctaccgtgtggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 471  Q
    |||||| ||||  ||||| ||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacactta 34136913  T
Q  472 caaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||| |||||    
T  34136912 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattga 34136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 392 - 547
Target Start/End: Original strand, 4404008 - 4404163
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggca 4404107  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    |||| |||||| ||||||| |||||||||| ||||||||||||||||||| |||||    
T  4404108 atctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 4404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 23402108 - 23402264
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 23402207  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||||| |||||||||| | ||||||||||| ||||||||||||    
T  23402208 atctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgac 23402264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 414 - 546
Target Start/End: Original strand, 9877242 - 9877374
Alignment:
Q  414 ggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaa 513  Q
    |||||||| |||||||||||||||||||||  |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  514 ataggtcttggaattttatttagcacactattg 546  Q
    |||||||| | ||||||||||||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 400 - 546
Target Start/End: Original strand, 36408559 - 36408705
Alignment:
Q  400 cgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaa 499  Q
    ||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||| |||||| |||||    
T  36408559 cgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggcaatttgaaa 36408658  T
Q  500 attatcacacgtaaataggtcttggaattttatttagcacactattg 546  Q
    ||| | |||||  |||||||||  |||||||||||| ||||||||||    
T  36408659 attcttacacgctaataggtctcagaattttatttaacacactattg 36408705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 547
Target Start/End: Complemental strand, 2729363 - 2729208
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||||||||||||| ||||||| |  ||| ||||||||||||||||||| ||| |||||||||  ||| ||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggca 2729264  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattga 547  Q
    || |||||| | ||| ||| ||||||||||   |||||||||||||||||||||||    
T  2729263 atttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 411 - 518
Target Start/End: Original strand, 3435288 - 3435397
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc--aatctgaaaattatcaca 508  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||  |||||||||||| ||| |    
T  3435288 ccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctcaaa 3435387  T
Q  509 cgtaaatagg 518  Q
    || |||||||    
T  3435388 cgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 424 - 548
Target Start/End: Original strand, 42230971 - 42231093
Alignment:
Q  424 ataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacgtaaataggtcttg 523  Q
    ||||||||||||||||| |  |||| |||||| ||||||||||  ||||||||||||||||||||||||| |||||||| ||| | | ||||||||||      
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  524 gaattttatttagcacactattgac 548  Q
    |||||||||||||||||||||||||    
T  42231069 gaattttatttagcacactattgac 42231093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 485
Target Start/End: Complemental strand, 40470637 - 40470567
Alignment:
Q  415 gctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatt 485  Q
    ||||||||||||||||||||||||||||| |||  |||||| ||||||||||| ||| ||||| |||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 477
Target Start/End: Complemental strand, 10397207 - 10397122
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaa 477  Q
    |||||||||||||   || |||||||| ||||||||||| | ||||||||  |||||||||||||| ||||||||| ||| |||||    
T  10397207 ggcgactccgggcactcgcccgggctcaatcgataatttcttcacattaggttcaacccaaaagccgattaacacagttaaaaaaa 10397122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 407 - 548
Target Start/End: Original strand, 52940 - 53081
Alignment:
Q  407 ccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatca 506  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||    
T  52940 ccgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctca 53039  T
Q  507 cacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    || | |||||||||| ||||||||||||||||||||||||||    
T  53040 catgcaaataggtctcggaattttatttagcacactattgac 53081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 392 - 548
Target Start/End: Original strand, 5230 - 5386
Alignment:
Q  392 ggcgactccgggcggccgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 491  Q
    |||||| |||||||| || |||||||||||| |||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
Q  492 atctgaaaattatcacacgtaaataggtcttggaattttatttagcacactattgac 548  Q
    ||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||    
T  5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgac 5386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 411 - 550
Target Start/End: Original strand, 31499 - 31638
Alignment:
Q  411 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattatcacacg 510  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||    
T  31499 ccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattctcactcg 31598  T
Q  511 taaataggtcttggaattttatttagcacactattgacag 550  Q
     |||||||||| | |||||||||| |||||||||||||||    
T  31599 caaataggtctagtaattttattttgcacactattgacag 31638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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