View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4723_high_2 (Length: 329)
Name: NF4723_high_2
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 44704195 - 44703870
Alignment:
| Q |
4 |
gtgaagagatcatcaatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctc |
103 |
Q |
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| T |
44704195 |
gtgaagaggtcatctatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctc |
44704096 |
T |
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| Q |
104 |
aacgttgttgcaccgtttttaacgcaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgtt |
203 |
Q |
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| T |
44704095 |
aacgttgttgcacggtttttaacggaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgtt |
44703996 |
T |
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| Q |
204 |
atctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttcaattggtgatgatgca |
303 |
Q |
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| T |
44703995 |
atctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttcaattggtgatgatgca |
44703896 |
T |
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| Q |
304 |
actgcggagcctacggtacaccctac |
329 |
Q |
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| T |
44703895 |
actgcggagcctacggtacaccctac |
44703870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 44714901 - 44714590
Alignment:
| Q |
1 |
agcgtgaagagatcatcaatgatcggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttct |
100 |
Q |
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| T |
44714901 |
agcgtgaagagatcatcaatgatcggacgaccacgtgcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttct |
44714802 |
T |
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| Q |
101 |
ctcaacgttgttgcaccgtttttaacgcaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagt |
200 |
Q |
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| T |
44714801 |
ctcaacgtggttgcaaagtttttaacgcgatgaaggaaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagt |
44714702 |
T |
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| Q |
201 |
gttatctctttgtgttaagcctggttttgacgctgcctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatggttcaattggtgatgat |
300 |
Q |
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| T |
44714701 |
gttctctctttgtgttaagcctggttttgatgctgcttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgattcccttgatgatgat |
44714602 |
T |
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| Q |
301 |
gcaactgcggag |
312 |
Q |
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| T |
44714601 |
gcaactgcggag |
44714590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 281
Target Start/End: Original strand, 2278054 - 2278291
Alignment:
| Q |
44 |
taacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgttgcaccgtttttaacgcaatgaaggaaaacgt |
143 |
Q |
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||||||||||||| |||||||||| |||| |||||||| ||||||||| || ||| | ||| | || || | ||||||| || | ||| || || |
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| T |
2278054 |
taacagtggaggtacacgataacccaggtgtggagtacctcattgaagggtgtttcccacaaagatgctgtaagatttttaatgccacaaagaaattagt |
2278153 |
T |
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| Q |
144 |
agctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgcctttgct |
243 |
Q |
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| T |
2278154 |
ggctgagattcgtcgtaaagtggaccccaccactagtgttatgcttgggaaagaagtgttcatgctttgtgttcaacctgattttgatgtgtcctttgcc |
2278253 |
T |
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| Q |
244 |
atgggattcgttctcgtccttgatcaaatcaacggtga |
281 |
Q |
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| T |
2278254 |
atgggattggttttggtacttgatcaaatcaatggtga |
2278291 |
T |
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