View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4723_low_1 (Length: 518)
Name: NF4723_low_1
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723_low_1 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0133 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 9284 - 8799
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9284 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggtaacaacaagcggatcactcgtttccatcctatgaagattttgg |
9185 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9184 |
ttcgtcgcaacattggaaagaggatgaaggagattgctaaagagatcgacgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
9085 |
T |
|
| Q |
219 |
gcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9084 |
gcgccaaccagaagatgaagggcggcggcaaactacctctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcatattgtagagttt |
8985 |
T |
|
| Q |
319 |
cttcta---aatgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
|||||| | ||| | |||||||||||||||||||||| ||| ||||||||| || ||| | |||||||||||||| ||||||| |||| ||||| |
|
|
| T |
8984 |
cttctacggcacgctggtgacagtgaagaactctctgtctattctattgttggccacggtggatatggaaaaacaacacttgctcaaacagtcttcaatg |
8885 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| | ||||||| |||||||||||||| |
|
|
| T |
8884 |
atgaaagggtaaagacacattttgacttgaaaatatgggtgtgtgtttctggtgatatcaatgcgatgaaagttttagagtccatc |
8799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 13632 - 13141
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13632 |
gcttatgtgattgatgatatattggatgaatgttcaataaccttaagagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
13533 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggatt---acatgtgggggtca- |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | | |||| |
|
|
| T |
13532 |
ctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaagatcgatgatattgctgaagaaaggatgaagttcggattacaacaatttgcagtcac |
13433 |
T |
|
| Q |
215 |
--tcgagcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
|||||||||| | |||||| || ||||| |||||||| |||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13432 |
ggaggagcgccaacgacgagatgatgaatggcgccaaactacttctgctgtcaccgaaccgaaagtatatggaagagacaaagataaagaacagattgta |
13333 |
T |
|
| Q |
313 |
gagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtct |
409 |
Q |
| |
|
|||||||| |||| | || || || ||||||||||||||||||| ||||||||||||| || ||| | |||||||||||||| ||||||||||||| |
|
|
| T |
13332 |
gagtttctgctaaggcacgccagtgagagtgaagaactctctgtctattccattgttggccacggtggatatggaaaaacaacacttgctcaaatggtct |
13233 |
T |
|
| Q |
410 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
13232 |
tcaatgatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaggttttagagtccatc |
13141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 38938737 - 38939209
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
38938737 |
gcttatgtacttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagtggatcactcgtttccatcctctgaagattttgg |
38938836 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
38938837 |
ctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaagatcgatgatattgctgaagaaaggatgaagttcggattacaagtgggggtcatgga |
38938936 |
T |
|
| Q |
219 |
gcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||| | |
|
|
| T |
38938937 |
gcgccaaccagaagatgaagagtggcggaaaactacctctgtcatcactgaatccgaagtatatggaagagacaaagataaagaacaaattgttgagtat |
38939036 |
T |
|
| Q |
319 |
cttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
||||| | |||||| | |||||||||| |||||||||| |||||||||||| | || ||| | |||||||||||||| |||||| |||||||||| |
|
|
| T |
38939037 |
cttctgaggcatgctaacaacagtgaagatctctctgtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaaca |
38939136 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
488 |
Q |
| |
|
||||||| |||| || |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
38939137 |
atgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
38939209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 476
Target Start/End: Original strand, 7052645 - 7053104
Alignment:
| Q |
23 |
atgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcg |
122 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| | |||| | ||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
7052645 |
atgttcttgatgatatattggacgaatgttcaataacatcaaaaccctgtggagacaacaagtggatcacccgtttccatcctaagaagattttggctcg |
7052744 |
T |
|
| Q |
123 |
tcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcat---cgag |
219 |
Q |
| |
|
|| ||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||| ||||| ||||| ||| |
|
|
| T |
7052745 |
gcgtgacattggaaagaggatgaaagaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattacaagtgggagtcatagaggag |
7052844 |
T |
|
| Q |
220 |
cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagtttc |
319 |
Q |
| |
|
|| || | || |||||| || ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
7052845 |
cgtcagcgaggagatgatgaatggcgccaaactacttctgtcatcactgaagttgtggtatatggaagagacaaagataaagagaagattgtcgagtttc |
7052944 |
T |
|
| Q |
320 |
ttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatga |
416 |
Q |
| |
|
|||| | ||||||| |||||||||||||||||| ||| | ||||||||||| | ||| | |||||||||||||| |||||| ||||||| || || |
|
|
| T |
7052945 |
ttctgaggcatgctagtgacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaattggtctataacga |
7053044 |
T |
|
| Q |
417 |
tgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag |
476 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
7053045 |
tgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcag |
7053104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 16658789 - 16658301
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | |||||||||||| | ||||||| | |||||| |||| ||||||||||||||||||| |
|
|
| T |
16658789 |
gcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatggaggcaacaagtgcatcactagttttcatcctatgaagattttgg |
16658690 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| || ||||| |||| |
|
|
| T |
16658689 |
ctcgtcgtaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggatcaagtttggatttcaactggtgggagtcac |
16658590 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | |||| || |||||| || ||||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658589 |
agaggagcagcaacgaggagatgatgaatggcgccaaactatttctactgtcaccgaaccgaaagtatatggaagagacaaagataaagagcagattgta |
16658490 |
T |
|
| Q |
313 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16658489 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtcttca |
16658390 |
T |
|
| Q |
413 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16658389 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttactgaaaattttagagtccatc |
16658301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 16781882 - 16781422
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781882 |
gcttatgtgcttgatgatatattggacgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
16781783 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
16781782 |
ctcgtcgcaacattggaaagaggatgaaggagattgctaaagagatcgatgatattgctgaagaaaggatgaagttcggattgcaggtgggggtcatgga |
16781683 |
T |
|
| Q |
219 |
gcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||| | |
|
|
| T |
16781682 |
gcaccaaccagaagatgaagagtggcggcaaactacctctgtcatcactgaatccaaagtatatggaagagacagagataaagaacaaattgttgagtat |
16781583 |
T |
|
| Q |
319 |
cttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
||||| | |||||||| | |||||||| |||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| | |
|
|
| T |
16781582 |
cttctgaggcatgctagcaatagtgaagatctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtatacaagg |
16781483 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag |
476 |
Q |
| |
|
||||||| |||| || |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16781482 |
atgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcag |
16781422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 16867386 - 16867872
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | |||||| ||||| | ||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
16867386 |
gcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcgcatggaggcaacaagtgcatcactagtttccatcctatgaagattttgg |
16867485 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| || ||||| |||| |
|
|
| T |
16867486 |
ctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggatcaagtttggatttcaactagtgggagtcac |
16867585 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | ||||| || |||||| || ||||| ||||||| ||| | | || ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867586 |
agaggagcaccaacgaggagatgatgaatggcgccaaactatttctattgttaccgaaccgaaagtatatggaagagacaaagataaagagcagattgta |
16867685 |
T |
|
| Q |
313 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
16867686 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtcttca |
16867785 |
T |
|
| Q |
413 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16867786 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgg--gtgtgtttcggacgatttcagtttgatgaaaattttagagtccatc |
16867872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 17070286 - 17069798
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | ||||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
17070286 |
gcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttgg |
17070187 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||| |||| | ||||||||| |||||||||| ||| ||||| || ||||| |||| |
|
|
| T |
17070186 |
ctcatcgcaacattggaaagaggatgaaggaggttgctaaaaggattgacgatattgctaaagaaaggatcgagtatggatttcaaccggtgggagtcac |
17070087 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | ||||| || |||||| || | ||||||| |||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17070086 |
ggaggagcaccaacgaggagatgatgaacagatccaaactatttctgctatcaccgaaccgaaagtatatggaagagacaaagataaagagcagattgta |
17069987 |
T |
|
| Q |
313 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
412 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069986 |
gagtttcttctaaatgctagtgacagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
17069887 |
T |
|
| Q |
413 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069886 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
17069798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 16838461 - 16837970
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | ||||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
16838461 |
gcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttgg |
16838362 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||| || ||||| |||| |
|
|
| T |
16838361 |
ctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcac |
16838262 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | ||||| || |||||| || ||| | |||||| |||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838261 |
ggaggagcaccaacgaggagatgatgaatggatcctaactacttctgctgtcaccgaaccaaaagtatatggaagagacaaagataaagagcagattgta |
16838162 |
T |
|
| Q |
313 |
gagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtct |
409 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16838161 |
gagtttcttatagggcatgctagtaacagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtct |
16838062 |
T |
|
| Q |
410 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838061 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
16837970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 16797949 - 16797462
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | ||||||| | ||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
16797949 |
gcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaaggcaacaagtgcatcacccgttttcatccaatgaaaattttgg |
16797850 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||| || ||||| |||| |
|
|
| T |
16797849 |
ctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcac |
16797750 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | ||||| || |||||| || ||| | |||||| |||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16797749 |
ggaggagcaccaacgaggagatgatgaatggatcctaactacttctgctgtcaccgaaccaaaagtatatggaagagacaaagataaagaacagattgta |
16797650 |
T |
|
| Q |
313 |
gagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtct |
409 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16797649 |
gagtttcttctagggcatgctagtaccagtgaagaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtct |
16797550 |
T |
|
| Q |
410 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797549 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtc |
16797462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 16988228 - 16987750
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
16988228 |
gcttatgtacttgatgatatattggatgaatgctcaataacctcaaaagcacatggagacaaca---------ctagtttccatcctatgaagattttgg |
16988138 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggatt---acatgtgggggtcat |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||| ||||| |
|
|
| T |
16988137 |
ctcatcgcaacattgggaagaggatgaagaaagttgctaaaaagattgatgatattgctgaagaaaggatcaagtttggatttcaacaagtgggagtcat |
16988038 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | |||| || |||||| || ||||| ||||||| ||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16988037 |
ggaggagcatcaacgaggagatgatgaatggcgccaaactatttctactatcacagaaccgaaagtatatggaagagacaaagataaagaacagattgta |
16987938 |
T |
|
| Q |
313 |
gagtttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtct |
409 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||| || ||| | ||||||||| |||| ||||||||||||| |
|
|
| T |
16987937 |
gagtttcttctaagacatgctagtgacagtgaaaaactctctgtctattccattgttggccacggtggatatggaaaaacagcacttgctcaaatggtct |
16987838 |
T |
|
| Q |
410 |
acaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtc |
497 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
16987837 |
tcaatgatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaagttttagagtc |
16987750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 501
Target Start/End: Original strand, 18872568 - 18873053
Alignment:
| Q |
22 |
tatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctc |
121 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18872568 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctc |
18872667 |
T |
|
| Q |
122 |
gtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgag-- |
219 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||| | || ||||| ||| |
|
|
| T |
18872668 |
gtcgggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattacaagcggtagtcatggagga |
18872767 |
T |
|
| Q |
220 |
-cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
||||||| || |||||| | ||||| |||||| ||||||||||||||| | ||||||||||||||||| || | |||||| |||| |||||| |
|
|
| T |
18872768 |
tcgccaacgaggagatgataaatggcgccaaactttttctgtcatcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgagttt |
18872867 |
T |
|
| Q |
319 |
cttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
18872868 |
cttctaagtcatgctgtcgatagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtcttcaatg |
18872967 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| |
|
|
| T |
18872968 |
atgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatc |
18873053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 501
Target Start/End: Original strand, 18805589 - 18806059
Alignment:
| Q |
37 |
atattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggga |
136 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||| | |
|
|
| T |
18805589 |
atattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaa |
18805688 |
T |
|
| Q |
137 |
agaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgag---cgccaaccagaaga |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| || | || ||||| ||| ||||||| || ||| |
|
|
| T |
18805689 |
agaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattgcaagcggtagtcatggaggatcgccaacgaggaga |
18805788 |
T |
|
| Q |
234 |
tgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagtttcttctaa---atgct |
330 |
Q |
| |
|
||| | ||||| ||||||| || |||||||||||| | ||||||||||||||||| || | |||||| |||| ||||||||||||| ||||| |
|
|
| T |
18805789 |
tgataaatggcgccaaactaattcagtcatcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgagtttcttctaagtcatgct |
18805888 |
T |
|
| Q |
331 |
agcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaa |
430 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||||||| | | |
|
|
| T |
18805889 |
gtcgatagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtattcaatgatgaaagggtagata |
18805988 |
T |
|
| Q |
431 |
cacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| |
|
|
| T |
18805989 |
cacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatc |
18806059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 23 - 495
Target Start/End: Complemental strand, 16788741 - 16788263
Alignment:
| Q |
23 |
atgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcg |
122 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||| | |||||||||||| ||||||||| | ||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
16788741 |
atgttcttgatgatttattggacgaatgttcaataacatcaaaagcacatggagacaacaagtgcatcacccgtttccttcctaagaagattttggctca |
16788642 |
T |
|
| Q |
123 |
tcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtca---tcgag |
219 |
Q |
| |
|
|| || |||| ||||||||||||| |||||||||||||||| | | ||||||| |||| |||||||||| ||||| || ||||| || | ||| |
|
|
| T |
16788641 |
gcgtgacgttggaaagaggatgaaggcggttgctaaaaagattgacgttattgctaaagacaggatgaagtatggattgcaagtgggagtaacagaagag |
16788542 |
T |
|
| Q |
220 |
cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagtttc |
319 |
Q |
| |
|
|| |||| || | ||| |||||||| |||||||| |||||| |||| ||| | |||||||||||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
16788541 |
cgtcaacgaggtgctgatgagtggcgccaaactacttctgtcgtcaccgaacctgtagtatatggaaggtacatatataaagagcagattgtaaagtttc |
16788442 |
T |
|
| Q |
320 |
ttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatga |
416 |
Q |
| |
|
||||| || ||| |||| |||||||||||||||| ||||||||||||| | || | | | |||||||||||||| |||||| | || ||||| | |
|
|
| T |
16788441 |
ctctaaagcatactactgacaaagaagaactctctgtctattccattgttggcctaggtgaatatggaaaaacaacacttgctcaattagtatacaacaa |
16788342 |
T |
|
| Q |
417 |
tgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagag |
495 |
Q |
| |
|
|||||| |||| || ||||||||| ||||||||||| | | |||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
16788341 |
tgaaagagtaagaaaccattttgacctgaaaatatggatttttgtttcagatgatttcagcatgatgaaggttttagag |
16788263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 18794005 - 18794273
Alignment:
| Q |
22 |
tatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctc |
121 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||| ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
18794005 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttacatcctaagaagattttggctc |
18794104 |
T |
|
| Q |
122 |
gtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgag-- |
219 |
Q |
| |
|
|| | || ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| || | || ||||| ||| |
|
|
| T |
18794105 |
gtaggaatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattgcaagcggtagtcatggagga |
18794204 |
T |
|
| Q |
220 |
-cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaag |
287 |
Q |
| |
|
||||||| || |||||| || ||||| |||||||| || ||| |||||||| | |||||||||||||| |
|
|
| T |
18794205 |
tcgccaacgaggagatgatgaatggcgccaaactacttcagtcgtcactgaaccgaaagtatatggaag |
18794273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 18870088 - 18870470
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||| | |||||||||||| ||||||||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
18870088 |
gcttatgttcttgatgatatattggatgattgtacaataaaatcaaaagcacatggagacaacaagtggatcaccagtttccatcctaagatgattttgg |
18870187 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
218 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| || || |||||||| |||| ||||| || |
|
|
| T |
18870188 |
ctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaaattaggattacaagtggtagtcatgga |
18870287 |
T |
|
| Q |
219 |
g---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagag |
315 |
Q |
| |
|
| ||||||| || || ||| || || |||||||| |||||| |||||||| | ||||| ||||||||||| |||| |||| | || | ||| |
|
|
| T |
18870288 |
ggatcgccaacgaggagttgatgaaaatcgccaaactacttctgtcgtcactgaaccaaaagtttatggaagagatcgtgatagagagaaagtttttgag |
18870387 |
T |
|
| Q |
316 |
tttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacact |
395 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||| ||| |||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
18870388 |
tttctgctaagtcatgctcttgacagtgaagaactctctttctattccattgttggtgttggtgggcaaggaaaaacaacact |
18870470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 18587083 - 18587252
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||| |||||| | |||||||||||| ||||||||| ||||||| ||||||||||||| || |||||||| |
|
|
| T |
18587083 |
gcttatgttcttgacgatatattggatgattgtacaataaaatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttgg |
18587182 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggat |
188 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
18587183 |
ctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggat |
18587252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 491
Target Start/End: Complemental strand, 16844500 - 16844135
Alignment:
| Q |
129 |
cattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgagcgccaacca |
228 |
Q |
| |
|
|||||| |||| |||||| ||||| ||| |||||||| ||| ||||||||||||||| || ||||| |||||||| || | | ||||| || | |
|
|
| T |
16844500 |
cattggaaagaagatgaaagaggtagctgaaaagattgatgctattgctgaagaaagaatcaagtttggattacaatctggaaacgtggagcgtcatctt |
16844401 |
T |
|
| Q |
229 |
gaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagtttcttctaa--- |
325 |
Q |
| |
|
|||||||| || ||||| |||||||| ||| |||| || ||| || || | ||||||| | | ||||| || || |||| ||||||||||||| |
|
|
| T |
16844400 |
gaagatgatgaatggcgccaaactacttctttcattaccgaaccccaaattcttggaagaaatgaggataaggaaaaggttgttgagtttcttctaaggc |
16844301 |
T |
|
| Q |
326 |
atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggt |
425 |
Q |
| |
|
|||||| |||| |||| ||||||||||| |||||||||||| ||| ||| | ||||| ||| |||| |||||| |||||| ||||||||| ||||| |
|
|
| T |
16844300 |
atgctattgacaaggaaggactctctgtctattccattgttggtcatggtggatatggaaagacagcacttgctcaactggtcttcaatgatgagagggt |
16844201 |
T |
|
| Q |
426 |
aaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaatttt |
491 |
Q |
| |
|
||| || |||||| |||||||||||||| |||||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
16844200 |
aaatactcattttcctttgaaaatatgggtttgtgtttctgatgattttagtatgatgaagatttt |
16844135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 9927 - 9455
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9927 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
9828 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcga |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
9827 |
ctcgtcgcaacattggaaagaggatgaaggagattgctaaagagattgatgatattgctgaagaaaggatgaagttcggattacaggtgggggtcatgga |
9728 |
T |
|
| Q |
219 |
gcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||| | |
|
|
| T |
9727 |
gcaccaaccagaagatgaagagtggcggcaaactacctccttcatcactgaatccatagtatttggaagagacaaagataaagaaaaaattgttgagtat |
9628 |
T |
|
| Q |
319 |
cttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
||||| | |||||||| |||||||||| |||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| | |
|
|
| T |
9627 |
cttctgaggcatgctagcaacagtgaagatctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacg |
9528 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
488 |
Q |
| |
|
| ||||| |||| || |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
9527 |
aagaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
9455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 38267 - 37779
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
38267 |
gcttatgtacttgatgatatattggatgaatgttcaataaccttaaaaccacacggagacgacaagtgcatcactagtttccatcctgtgaagattttgg |
38168 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacat---gtgggggtcat |
215 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| || || ||||| || ||||| |||| |
|
|
| T |
38167 |
cttgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggaacaaatttggatttcaacgagtgggagtcac |
38068 |
T |
|
| Q |
216 |
cgag---cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgta |
312 |
Q |
| |
|
||| | |||| || |||||| || ||||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38067 |
ggaggagcatcaacgaggagatgatgaatggcgccaaactatttctactgtcaccgaaccgaaagtatatggaagagacaaagataaagaacagattgta |
37968 |
T |
|
| Q |
313 |
gagtttcttctaaatgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
412 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967 |
gagtttcttctaaatgccagcgaaagtgaagaactctttgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
37868 |
T |
|
| Q |
413 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
37779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 22 - 501
Target Start/End: Complemental strand, 10136 - 9651
Alignment:
| Q |
22 |
tatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctc |
121 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||| ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
10136 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgttttcatcctaagaagattttggctc |
10037 |
T |
|
| Q |
122 |
gtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgag-- |
219 |
Q |
| |
|
|| | | ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| || | || ||||| ||| |
|
|
| T |
10036 |
gttggcatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattgcaagcggtagtcatggagga |
9937 |
T |
|
| Q |
220 |
-cgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagttt |
318 |
Q |
| |
|
||||||| || |||||| || ||||| |||||||| || ||| |||||||| | |||||||||||||||||| || | |||||| |||| |||||| |
|
|
| T |
9936 |
tcgccaacgaggagatgatgaatggcgccaaactacttcagtcgtcactgaaccgaaagtatatggaagagaccgtgacagagagcaagttgttgagttt |
9837 |
T |
|
| Q |
319 |
cttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatg |
415 |
Q |
| |
|
||||||| ||| | || |||||||||||||| |||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
9836 |
cttctaagtcatgttgtggatagtgaagaactctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatg |
9737 |
T |
|
| Q |
416 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| |
|
|
| T |
9736 |
atgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatc |
9651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 5459 - 4971
Alignment:
| Q |
19 |
gcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttgg |
118 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||| |||||| | |||||||||||| ||||||||| ||||||| ||||||||||||| || |||||||| |
|
|
| T |
5459 |
gcttatgttcttgacgatatattggatgattgtacaataaaatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttgg |
5360 |
T |
|
| Q |
119 |
ctcgtcgcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcat--- |
215 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||| | || ||||| |
|
|
| T |
5359 |
ctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattacaagcggtagtcatgga |
5260 |
T |
|
| Q |
216 |
cgagcgccaaccagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagag |
315 |
Q |
| |
|
|| ||||||| || |||||| | ||||| |||||| |||||| |||||||| | ||||||||||||||||| || | |||||| |||| ||| |
|
|
| T |
5259 |
agatcgccaacgaggagatgataaatggcgccaaactttttctgtcgtcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgag |
5160 |
T |
|
| Q |
316 |
tttcttctaa---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctaca |
412 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||| |||| | || |
|
|
| T |
5159 |
tttcttctaagtcatgctgtcgatagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttca |
5060 |
T |
|
| Q |
413 |
atgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatc |
501 |
Q |
| |
|
|||| ||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| |
|
|
| T |
5059 |
atgaggaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatc |
4971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 28 - 488
Target Start/End: Complemental strand, 13378868 - 13378402
Alignment:
| Q |
28 |
cttgatgatatattggatgaatgttcaataaccttaaaagcacatgg---cgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtc |
124 |
Q |
| |
|
|||||||||||||| || |||| ||| |||| | ||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
13378868 |
cttgatgatatattagacgaatattcgataagatccaaagcacatggagacgacgacaagtggatcactcgtttccatcctaagaagattttggctcgcc |
13378769 |
T |
|
| Q |
125 |
gcaacattgggaagaggatgaaggaggttgctaaaaagattcatgatattgctgaagaaaggatgaagttcggattacatgtgggggtcatcgagcgcca |
224 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||||| ||||| |||| | |
|
|
| T |
13378768 |
gaggtattggaaagaggatgaaagaggttgctaaaaagattgatgttattgctgaagaccggatcaagtttggattacatgtgggagtcatggagcatct |
13378669 |
T |
|
| Q |
225 |
accagaagatgaagagtggcggcaaactacgtctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcagattgtagagtttcttcta |
324 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| || ||||| |||| ||||||| |
|
|
| T |
13378668 |
accagaagacatggagtggcgccaaactacttctatcatcactaaatccaaagtatatggaagagacaaagataaagaacaaattgttgagtatcttcta |
13378569 |
T |
|
| Q |
325 |
a---atgctagcgacagtgaagaactctctgtctgttccattgttggcgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaa |
421 |
Q |
| |
|
| |||| || |||| ||||| ||||||||| ||||||||||||| | || ||| | |||||||||||||| |||||| |||| ||||| ||||||| |
|
|
| T |
13378568 |
agggatgcaagtaacagagaagatatctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatgaaa |
13378469 |
T |
|
| Q |
422 |
gggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
488 |
Q |
| |
|
|||| || || |||||||||||||||||||| |||||||| |||||||||||| ||| |||||| |
|
|
| T |
13378468 |
acgtaagcacccactttgacttgaaaatatgggtttgtgtttctgatgatttcagtatgaagaaaat |
13378402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 30476416 - 30476374
Alignment:
| Q |
385 |
aaaacaacactcgctcaaatggtctacaatgatgaaagggtaa |
427 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
30476416 |
aaaacaacacttgctcaaatggtctacaatgatcatagggtaa |
30476374 |
T |
|
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