View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4723_low_3 (Length: 240)
Name: NF4723_low_3
Description: NF4723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4723_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44704261 - 44704496
Alignment:
| Q |
1 |
tcggcctctgcttcacatgatttttaagtttattcaaatcaatgaagcaattcaatggtgcacatataagacaaatgctgtatgatgtatgtatac---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44704261 |
tcggcctctgcttcacatgatttttaagtttattcaaatcaatgaagcaattcaatggtgcacatataagacaaatgctgtatgatgtatacttacgttt |
44704360 |
T |
|
| Q |
97 |
-----------taaatcaaatgagtattgtgagatttattaattaattcaatcgtagaaaaaattgtgccctatagaattcagaatagaacaaatcccct |
185 |
Q |
| |
|
| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44704361 |
ctaacatttgtttaataaaatgagtattgtgagatttatta----attcaatcgtagaaaaaattgtgccctatagaattcagaatagaacaaatcccct |
44704456 |
T |
|
| Q |
186 |
tctccaaaatctccagtaacgaaaaataaactatgatttt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44704457 |
tctccaaaatctccagtaacgaaaaataaactatgatttt |
44704496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University