View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724-Insertion-1 (Length: 1001)
Name: NF4724-Insertion-1
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 817; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 13 - 1001
Target Start/End: Complemental strand, 18627832 - 18626856
Alignment:
| Q |
13 |
tacataagcatttacgcataagcatttatatgttgataattaacactcccagcctttatacataagcatttatgctataagcacttattaagatgtttat |
112 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18627832 |
tacataagcatttacgcataaccat--atatgttgataa----cactctcaacctttatacataagcatttatgctataagcacttattaagatgtttat |
18627739 |
T |
|
| Q |
113 |
ccaatcagcaccaaaatatatgttgataacacaatgaatgtgtcattatgttttctcaggtgacagaggaatgtcccatgctgagttaacatggccaaac |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
18627738 |
ccaatcagcaccaaaatgtatgttgataacacaatgaatgtgtcattatgttttctcaggtgacagaggaatgtcccatgctgagttaacttggccgaac |
18627639 |
T |
|
| Q |
213 |
cgtttaaagatcgctaaaggaattgcaagagggttaaacttcctttacactgaattttcaacctatgacttacctcatggaaacctcaaatcaagcaatg |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18627638 |
cgtttaaagattgctaaaggaattgcaagagggttaagcttcctttacactgaattttcaacctatgacttacctcatggaaacctcaaatcaagcaatg |
18627539 |
T |
|
| Q |
313 |
ttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctaacattgcagtgcaatcaatgtttgcatacaaaac |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18627538 |
ttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctagcattgcagtgcaatcaatgtttgcatacaaaac |
18627439 |
T |
|
| Q |
413 |
accggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaactcattacaggaaaattcccttctcag |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18627438 |
accggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaactcattacaggaaaattcccttctcag |
18627339 |
T |
|
| Q |
513 |
tatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagctgaattgattgatcctgagttaaaaa |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18627338 |
tatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagctgaattgattgatcctgagttaaaaa |
18627239 |
T |
|
| Q |
613 |
ataatgcatcaaataaaaccagtaatatgctgcaacttctccttattggtgctgcttgtactgaaagcaatccagaacaaagactacacatgaaggaagc |
712 |
Q |
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| T |
18627238 |
ataatgcatcaaataaaacaagtaatatgctgcaacttctccttattggtgctgcttgtactgaaagcaatccggaacaaagactacacatgaaggaagc |
18627139 |
T |
|
| Q |
713 |
tattagaaggatggaggaagtacaactctaaagatcatgttaataaagatagtttagttcaaagtttcttttgtaggtgatggttggtgggaaaattgga |
812 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18627138 |
tattagaaggatagaggaagcacaactctaaagatcatgttaataaagatagcttagttcaaagtttcttttgtaggtgatggttggt-ggaaaattgga |
18627040 |
T |
|
| Q |
813 |
aatattacctagctgcaccgacacttcagaatggaggtgtgtttggtgttcgaaacgacataaacacatgtagttatattcaggtttcttccaactttca |
912 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
18627039 |
aatattacctagctgcaccaacacttcagaatgaaggtgtgtttggtgtttgaaacgacacaaacacatgtagttatattca-gtttcttccagttttca |
18626941 |
T |
|
| Q |
913 |
aattattatcagtgtcaacgtgtcactgccggtgttcaagtgttggtgcttcatattcaggagaagaaaggagaaaagaaaaaaggttg |
1001 |
Q |
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||||||||||| |||||||||||||||| | |||||| |||||| |||||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
18626940 |
aattattatcaatgtcaacgtgtcactgtc-gtgttc-agtgtttgtgcttcatattca-gagaagaagggag-aaagaaaaaaggttg |
18626856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 288 - 609
Target Start/End: Original strand, 51846122 - 51846443
Alignment:
| Q |
288 |
catggaaacctcaaatcaagcaatgttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctaacattgcag |
387 |
Q |
| |
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|||||||||||||||||||||||| | || ||| | ||| |||||||||| || |||||||||| ||| ||||| ||| |||||||| | | |||| |
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| T |
51846122 |
catggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgcaa |
51846221 |
T |
|
| Q |
388 |
tgcaatcaatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaact |
487 |
Q |
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||| ||||||||||||||||||| || |||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
51846222 |
cacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaat |
51846321 |
T |
|
| Q |
488 |
cattacaggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagct |
587 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51846322 |
cattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtactgatgttgttcaatgggtgttcacagcaatttctgagagaagagaagct |
51846421 |
T |
|
| Q |
588 |
gaattgattgatcctgagttaa |
609 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
51846422 |
gaattgattgatccagagttaa |
51846443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 637 - 747
Target Start/End: Original strand, 51846471 - 51846581
Alignment:
| Q |
637 |
atatgctgcaacttctccttattggtgctgcttgtactgaaagcaatccagaacaaagactacacatgaaggaagctattagaaggatggaggaagtaca |
736 |
Q |
| |
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||||| |||||||||| | ||||| |||||||| || ||||| || || |||||| |||| ||||||||||||| ||||| ||||| |||||| |||| |
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| T |
51846471 |
atatgttgcaacttcttcaaattggggctgcttgcacagaaagtaaccctgaacaacgacttaacatgaaggaagcaattaggaggatagaggaattaca |
51846570 |
T |
|
| Q |
737 |
actctaaagat |
747 |
Q |
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| | ||||||| |
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| T |
51846571 |
agtttaaagat |
51846581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 495 - 604
Target Start/End: Complemental strand, 7665342 - 7665233
Alignment:
| Q |
495 |
ggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagctgaattga |
594 |
Q |
| |
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|||||||| |||||||| |||| ||| ||||||||||| ||||||||||| || |||||||| ||||||||||||| ||||||||| |||| | |
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| T |
7665342 |
ggaaaatttccttctcaatatcttagcaacggtaaaggcggaaccgatgtagtacaatgggtagcatcagcaatttctgaaggaagagaagttgaactac |
7665243 |
T |
|
| Q |
595 |
ttgatcctga |
604 |
Q |
| |
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|||||||||| |
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| T |
7665242 |
ttgatcctga |
7665233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 12521499 - 12521450
Alignment:
| Q |
68 |
ttatacataagcatttatgctataagcactt-attaagatgtttatccaa |
116 |
Q |
| |
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||||||||||| |||||||||| |||||||| |||||| ||||||||||| |
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| T |
12521499 |
ttatacataagaatttatgctaaaagcacttaattaagctgtttatccaa |
12521450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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