View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4724-Insertion-3 (Length: 893)

Name: NF4724-Insertion-3
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4724-Insertion-3
NF4724-Insertion-3
[»] chr6 (3 HSPs)
chr6 (8-892)||(10978359-10979245)
chr6 (582-631)||(2879134-2879183)
chr6 (580-623)||(22569946-22569989)
[»] chr3 (9 HSPs)
chr3 (268-457)||(31286224-31286412)
chr3 (577-623)||(8765763-8765809)
chr3 (577-623)||(8770653-8770699)
chr3 (384-457)||(26484782-26484855)
chr3 (580-627)||(13938804-13938851)
chr3 (580-623)||(16223573-16223616)
chr3 (576-623)||(52935495-52935542)
chr3 (579-628)||(5632667-5632716)
chr3 (584-629)||(8145344-8145389)
[»] chr5 (4 HSPs)
chr5 (580-636)||(12029501-12029557)
chr5 (368-461)||(18608810-18608903)
chr5 (580-623)||(20860431-20860474)
chr5 (580-623)||(31600037-31600080)
[»] chr4 (5 HSPs)
chr4 (268-428)||(19217927-19218087)
chr4 (576-623)||(11782580-11782627)
chr4 (588-630)||(38656512-38656554)
chr4 (582-627)||(12286828-12286873)
chr4 (582-663)||(26117229-26117310)
[»] chr2 (7 HSPs)
chr2 (344-468)||(34077040-34077164)
chr2 (581-636)||(39730328-39730383)
chr2 (579-636)||(31449838-31449895)
chr2 (379-427)||(29862290-29862338)
chr2 (576-627)||(27907480-27907531)
chr2 (381-427)||(22115397-22115443)
chr2 (384-425)||(28413963-28414004)
[»] scaffold0210 (1 HSPs)
scaffold0210 (582-633)||(25216-25267)
[»] chr7 (8 HSPs)
chr7 (580-627)||(12865302-12865349)
chr7 (579-636)||(16536750-16536807)
chr7 (579-636)||(16628855-16628912)
chr7 (582-631)||(23689345-23689394)
chr7 (580-623)||(39270235-39270278)
chr7 (580-622)||(2506783-2506825)
chr7 (579-636)||(16577448-16577505)
chr7 (579-636)||(16588157-16588214)
[»] chr1 (2 HSPs)
chr1 (580-627)||(22624834-22624881)
chr1 (583-636)||(31313433-31313486)
[»] chr8 (4 HSPs)
chr8 (610-740)||(39438673-39438805)
chr8 (754-854)||(39438827-39438928)
chr8 (576-616)||(18446828-18446868)
chr8 (580-623)||(29765353-29765396)
[»] scaffold0049 (1 HSPs)
scaffold0049 (582-633)||(39612-39663)
[»] scaffold0282 (1 HSPs)
scaffold0282 (577-636)||(22720-22779)
[»] scaffold0072 (1 HSPs)
scaffold0072 (580-623)||(38383-38426)
[»] scaffold0043 (1 HSPs)
scaffold0043 (580-623)||(88398-88441)


Alignment Details
Target: chr6 (Bit Score: 819; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 8 - 892
Target Start/End: Complemental strand, 10979245 - 10978359
Alignment:
Q  8 cttgatgcatgccttcactttgtatcaccaagtttctaaatagataaaaatgtatgcaagg-tctctatttataagaaagtttttgtaatgggtttacgc 106  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10979245 cttgatgcatgccttcactttgtaccaccaagtttctaaatgaataaaaatgtatgcaagggtctctatttataagaaagtttttgtaatgggtttacgc 10979146  T
Q  107 gttttttccactaatctagcttgaaaaacgaggaaatggaaaattttacttgcaaccatgtgtcggggagcatggggaaggggtttgataccgtctagca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10979145 gttttttccactaatctagcttgaaaaacgaggaaatggaaaattttacttgcaaccatgtgtcggggagcatggggaaggggttttataccgtctagca 10979046  T
Q  207 ctaccatgcgcctgagggacatggggcattcctgtggcggatggcttcgtcaaaaatgcggaaatgtcatttttcttcgttcttagagtcttcttttcca 306  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979045 ctaccatgcgcctgagggacatggggcattcctatggcgcatggcttcgtcaaaaatgcggaaatgtcatttttcttcgttcttagagtcttcttttcca 10978946  T
Q  307 tgctatgatcttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataact 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978945 tgctatgatcttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataact 10978846  T
Q  407 caatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagacttaaatgacttaattgaaaaacaatacaatgtatcccttaaaccatgata 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978845 caatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagacttaaatgacttaattgaaaaacaatacaatgtatcccttaaaccatgata 10978746  T
Q  507 atctcctctaaaacatttgtagcatgacctcagactctaaataaatgactaaaaaacatagctaaatatcctatcatcacaaccccaaacttaaaaggtt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||    
T  10978745 atctcctctaaaacatttgtagcatgacctcagactctaaataaatgactaaaaaacgtagctaaatatcctattatcacaaccccaagcttaaaaggtt 10978646  T
Q  607 gtttgtcctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttccatatgggttctcagaccattgttcattccac 706  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978645 gtttgccctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttccatatgggttctcagaccattgttcattccac 10978546  T
Q  707 ttgaagttatgactacttcccgcttttgctcaagtggtaaaggcttaaatcatactctcaaccatactatatttcataatgtatcatcttaaagccagca 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978545 ttgaagttatgactacttcccgcttttgctcaagtggtaaaggcttaaatcatactctcaaccatactatatttcataatgtatcatcttaaagccagca 10978446  T
Q  807 gggctgtcgaggcattttcacactccagccgacatgttaatgcatctttctaacttgaaacagttct-aatagtcattcaaaatcaa 892  Q
    ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10978445 gggcaatcgaggcattttcacactccagccgacgtgttaatgcatctttctaacttgaaacagttctaaatagtcattcaaaatcaa 10978359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 2879183 - 2879134
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaataga 631  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  2879183 atcacaaccccaaacttaatatgttgcttgtcctcaagtaacaaaataga 2879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 580 - 623
Target Start/End: Original strand, 22569946 - 22569989
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  22569946 tcatcacaaccccaaacttaaattgttgtttgtcctcaagtaac 22569989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 268 - 457
Target Start/End: Original strand, 31286224 - 31286412
Alignment:
Q  268 aaatgtcatttttcttcgttcttagagtcttctt-ttccatgctatgatcttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctc 366  Q
    |||||||||||||||| |||||| ||||  |||| ||||||||| | || |||| ||| |||| || ||||||| | ||||| |||||||||||| |||     
T  31286224 aaatgtcatttttctttgttctttgagtggtcttcttccatgcttttattttggaacttgggatattatttttccacattgtattgtctttaaaatcctt 31286323  T
Q  367 cttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagact 457  Q
     |||| ||||| | ||||||||||| || ||| |||||||||| |   | | |||||||||| |||| |||||||||| ||||||| ||||    
T  31286324 attgaactccattgatcttcattctttttcctccataactcaacg--ctattttgatttgccgaattacataatttcttactaaaatgact 31286412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 623
Target Start/End: Original strand, 8765763 - 8765809
Alignment:
Q  577 ctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  8765763 ctatcatcacaaccccaaacttaaacggttgcttgtcctgaagtaac 8765809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 623
Target Start/End: Original strand, 8770653 - 8770699
Alignment:
Q  577 ctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  8770653 ctatcatcacaaccccaaacttaaacggttgcttgtcctgaagtaac 8770699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 26484855 - 26484782
Alignment:
Q  384 ttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagact 457  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||| | || ||| |||| |||| |||| ||||    
T  26484855 ttcattctcttgcctgcataactccatgtgatgtcttgatttgccgatttacatgatttatcaccaaaatgact 26484782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 13938851 - 13938804
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaa 627  Q
    ||||||||||||||||||||||  |||||||||||| || ||||||||    
T  13938851 tcatcacaaccccaaacttaaactgttgtttgtcctgaaataacaaaa 13938804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Original strand, 16223573 - 16223616
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  16223573 tcatcacaaccccaaacttaaattgttgcttgtcctcaagtaac 16223616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 623
Target Start/End: Complemental strand, 52935542 - 52935495
Alignment:
Q  576 cctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    |||||||||||||||||||| |||||  |||| |||||||||||||||    
T  52935542 cctatcatcacaaccccaaatttaaattgttgattgtcctcaagtaac 52935495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 628
Target Start/End: Original strand, 5632667 - 5632716
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaat 628  Q
    |||||||||||||||||||||||  |||| |||||| |||| ||||||||    
T  5632667 atcatcacaaccccaaacttaaaccgttgcttgtccccaagcaacaaaat 5632716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 629
Target Start/End: Original strand, 8145344 - 8145389
Alignment:
Q  584 cacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaata 629  Q
    ||||||||||||||||||  |||| ||||||||||||||| |||||    
T  8145344 cacaaccccaaacttaaattgttgcttgtcctcaagtaactaaata 8145389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 12029557 - 12029501
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  12029557 tcatcacaaccccaaacttaaaatattttttgtcctcaagtaacaaaatagaaagaa 12029501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 18608903 - 18608810
Alignment:
Q  368 ttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagacttaaa 461  Q
    |||| ||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||| |  | ||  |||||||||||||| | ||||||    
T  18608903 ttgaactccattgatcttcattctcttgccttcataactccatgtgatgtcttgatttgccgacctacacgatttctcactaaaatggcttaaa 18608810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Original strand, 20860431 - 20860474
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  20860431 tcatcacaaccccaaacttaaactgttgcttgtcctcaagtaac 20860474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 31600080 - 31600037
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  31600080 tcatcacaaccccaaacttaaatggttgcttgtcatcaagtaac 31600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 19218087 - 19217927
Alignment:
Q  268 aaatgtcatttttcttcgttcttagagtcttcttttccatgctatgatcttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctcc 367  Q
    |||||| ||||||||||||| || ||||  ||||||| ||| | | ||||||||||| | ||  | ||||| | | ||||| ||| ||| |||||||| |    
T  19218087 aaatgttatttttcttcgttttttgagtgatcttttctatgttgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttc 19217988  T
Q  368 ttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgcc 428  Q
    |||| ||||  | |||||||||||||||||| |||||||| | || |||||||||||||||    
T  19217987 ttgaactcctttgatcttcattctcttgcctccataactccacgtgatgtcttgatttgcc 19217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 576 - 623
Target Start/End: Original strand, 11782580 - 11782627
Alignment:
Q  576 cctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||    
T  11782580 cctatcatcacaaccccaaacttaaaatggtgcttgtcctcaagtaac 11782627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 588 - 630
Target Start/End: Complemental strand, 38656554 - 38656512
Alignment:
Q  588 accccaaacttaaaaggttgtttgtcctcaagtaacaaaatag 630  Q
    ||||||||||||||  |||||| ||||||||||||||||||||    
T  38656554 accccaaacttaaattgttgttcgtcctcaagtaacaaaatag 38656512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 627
Target Start/End: Original strand, 12286828 - 12286873
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaa 627  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||    
T  12286828 atcacaaccccaaacataaaccgttgtttgtcctcaaataacaaaa 12286873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 663
Target Start/End: Complemental strand, 26117310 - 26117229
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatg 663  Q
    |||| |||||||||||||||   ||||||||| | |||||||||||||| || || || |||||||||  ||| ||||||||    
T  26117310 atcagaaccccaaacttaaactattgtttgtcattaagtaacaaaatagcaataagtcgtaatttgcacaaatttttagatg 26117229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 344 - 468
Target Start/End: Complemental strand, 34077164 - 34077040
Alignment:
Q  344 attgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttc 443  Q
    ||||| ||||||| |||||| | || ||||||||   |||||||||||||||  |  |||| || |||| |||||||| ||||||||||| ||| |||||    
T  34077164 attgtattgtcttcaaaaactttctcgagctccatggatcttcattctcttggttctataattccatgtgatgtcttggtttgccaaattacatgatttc 34077065  T
Q  444 tcactaaaaagacttaaatgactta 468  Q
    ||||||||| |||| ||| ||||||    
T  34077064 tcactaaaatgactcaaaagactta 34077040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 581 - 636
Target Start/End: Complemental strand, 39730383 - 39730328
Alignment:
Q  581 catcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||    
T  39730383 catcacaaccccaaacttaaaatgttatttgtcctcaagcaacaaaatagcaagaa 39730328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 31449895 - 31449838
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||| ||| |||||    
T  31449895 atcatcacaaccccaaacttaaactgttgcttgtcctcaagtaacaaattagcaagaa 31449838  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 29862290 - 29862338
Alignment:
Q  379 ttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgc 427  Q
    |||||||||||||||| ||| |||||||| |||| ||||||||||||||    
T  29862290 ttatcttcattctctttcctccataactctatgtgatgtcttgatttgc 29862338  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 627
Target Start/End: Complemental strand, 27907531 - 27907480
Alignment:
Q  576 cctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaa 627  Q
    |||||||||||||||||||  |||||  |||| |||||||||||||||||||    
T  27907531 cctatcatcacaaccccaattttaaattgttgcttgtcctcaagtaacaaaa 27907480  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 22115397 - 22115443
Alignment:
Q  381 atcttcattctcttgccttcataactcaatgtaatgtcttgatttgc 427  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  22115397 atcttcattatcttgcctacataactctatgtgatgtcttgatttgc 22115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 425
Target Start/End: Complemental strand, 28414004 - 28413963
Alignment:
Q  384 ttcattctcttgccttcataactcaatgtaatgtcttgattt 425  Q
    ||||||||||||||| |||||||| |||| ||||||||||||    
T  28414004 ttcattctcttgcctccataactctatgtgatgtcttgattt 28413963  T

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Target: scaffold0210 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 633
Target Start/End: Original strand, 25216 - 25267
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaa 633  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  25216 atcacaaccccaaacttaatatgttgcttgtcctcaagtaacaaaatagaaa 25267  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 12865302 - 12865349
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaa 627  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12865302 tcatcacaacccaaaacttaaacggttgtttgtcctcaagtaacaaaa 12865349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 636
Target Start/End: Original strand, 16536750 - 16536807
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    ||||||||||||  |||||||||  |||||||||||||||| ||||||||| ||||||    
T  16536750 atcatcacaaccttaaacttaaattgttgtttgtcctcaagcaacaaaataaaaagaa 16536807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 16628912 - 16628855
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    ||||||||||||  |||||||||  |||||||||||||||| ||||||||| ||||||    
T  16628912 atcatcacaaccttaaacttaaattgttgtttgtcctcaagcaacaaaataaaaagaa 16628855  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 631
Target Start/End: Original strand, 23689345 - 23689394
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaataga 631  Q
    ||||||||||||||||||| | ||||  ||||||||||||||||||||||    
T  23689345 atcacaaccccaaacttaatatgttgcatgtcctcaagtaacaaaataga 23689394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 39270278 - 39270235
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  39270278 tcatcacaaccccaaacttaaattgttgcttgtcctcaagtaac 39270235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 622
Target Start/End: Complemental strand, 2506825 - 2506783
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaa 622  Q
    ||||||||||||||||||||||  |||| ||||||||||||||    
T  2506825 tcatcacaaccccaaacttaaatagttgcttgtcctcaagtaa 2506783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 636
Target Start/End: Original strand, 16577448 - 16577505
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    ||||||||||||  |||||||||  |||||||||||||||| || |||||| ||||||    
T  16577448 atcatcacaaccttaaacttaaattgttgtttgtcctcaagcaaaaaaataaaaagaa 16577505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 16588214 - 16588157
Alignment:
Q  579 atcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    ||||||||||||  |||||||||  |||||||||||||||| || |||||| ||||||    
T  16588214 atcatcacaaccttaaacttaaattgttgtttgtcctcaagcaaaaaaataaaaagaa 16588157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 580 - 627
Target Start/End: Complemental strand, 22624881 - 22624834
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaa 627  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22624881 tcatcacaaccccaaacttaaacggttgcttgtcctcaagtaacaaaa 22624834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 636
Target Start/End: Complemental strand, 31313486 - 31313433
Alignment:
Q  583 tcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    |||||||||||||||||||  |||| ||||||||| | |||||||||| |||||    
T  31313486 tcacaaccccaaacttaaactgttgcttgtcctcaggcaacaaaatagcaagaa 31313433  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 740
Target Start/End: Original strand, 39438673 - 39438805
Alignment:
Q  610 tgtcctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttcca-tatgggttctcagaccattgttcattccactt 708  Q
    |||||||  |||||||||||| ||||| ||  ||||||||| ||||| |||||| ||||| ||||||  ||||||||||| || ||||||| ||| ||||    
T  39438673 tgtcctcgggtaacaaaatagcaagaagtcggaatttgcataaatatgtagatgacatacctttccagaatgggttctcaaactattgttcgttcaactt 39438772  T
Q  709 gaagttatgact-acttcccgcttttgctcaag 740  Q
    | || | ||||| |||| ||||||| |||||||    
T  39438773 gcagctttgactaacttaccgctttcgctcaag 39438805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 854
Target Start/End: Original strand, 39438827 - 39438928
Alignment:
Q  754 aatcatactctcaaccatactatatttcataatgtatcatcttaaagccagcagggct-gtcgaggcattttcacactccagccgacatgttaatgcatc 852  Q
    ||||||||||||||||| ||| |||| ||| |||||||||| ||||| |||||||| |  || |||||||||  |||||||  | | |||||||||||||    
T  39438827 aatcatactctcaaccacactctattccatcatgtatcatcataaagtcagcaggggtactcaaggcatttttccactccattcaatatgttaatgcatc 39438926  T
Q  853 tt 854  Q
    ||    
T  39438927 tt 39438928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 576 - 616
Target Start/End: Complemental strand, 18446868 - 18446828
Alignment:
Q  576 cctatcatcacaaccccaaacttaaaaggttgtttgtcctc 616  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  18446868 cctatcatcacaaccccaaacttaaaatgttgcttgtcctc 18446828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 29765396 - 29765353
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  29765396 tcatcacaaccccaaacttaaattgttgcttgtcctcaagtaac 29765353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 582 - 633
Target Start/End: Original strand, 39612 - 39663
Alignment:
Q  582 atcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaa 633  Q
    ||||||||||||||||||| | |||| ||||||||||| |||||||||||||    
T  39612 atcacaaccccaaacttaatatgttgcttgtcctcaaggaacaaaatagaaa 39663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 636
Target Start/End: Original strand, 22720 - 22779
Alignment:
Q  577 ctatcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 636  Q
    |||||||||||||||||||||||||  |||| ||| ||||||| |||| ||||| |||||    
T  22720 ctatcatcacaaccccaaacttaaagtgttgcttgccctcaagcaacacaatagcaagaa 22779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Original strand, 38383 - 38426
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  |||| |||||||||||||||    
T  38383 tcatcacaaccccaaacttaaattgttgcttgtcctcaagtaac 38426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 88441 - 88398
Alignment:
Q  580 tcatcacaaccccaaacttaaaaggttgtttgtcctcaagtaac 623  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||    
T  88441 tcatcacaaccccaaacttaaattgttgtttgtcctcaattaac 88398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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