View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4724-Insertion-5 (Length: 671)
Name: NF4724-Insertion-5
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4724-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 32704842 - 32705243
Alignment:
| Q |
8 |
ttcattacggtaaatgttatggaaaataacaaatgaataatagtctcattctcatagatggaaatgtgagatacatcaaatatttatagacaaatataga |
107 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704842 |
ttcattacggtaaatgttatggaaaataaaaaatgaataatagtctcattctcatagatggaaatgtgagatacatcaaatatttatagacaaatatagc |
32704941 |
T |
|
| Q |
108 |
aaattacacttaacctaattacatgctaatatgagagtttagactaaatgcaactaagtagcttgtatctcaagtaagctagatatgggtgttgaatcct |
207 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704942 |
aaattacacttaacctaattaaatgctaatatgagagttcagactaaatgtaactaagtagcttgtatctcaagtaagctagatatgggtgttgaatcct |
32705041 |
T |
|
| Q |
208 |
aggtggcatctttctcttctatctctaatagtaaacataaacaaacacaaaataaactatgttactttctttgaaaactacgaaaaatacactaaattaa |
307 |
Q |
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| T |
32705042 |
---taacatctttctcttctatctctaatagtaaacataaacaaacacaaaataaactatgttactttctttgaaaactacgaaaaatacactaaattaa |
32705138 |
T |
|
| Q |
308 |
atacagtaccaaattaattttcttaacacacctgaagtaagaagttatctgcataacttgcatctccagcgcctccattcatgtgtagcacctttgctaa |
407 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32705139 |
atagagtaccaaattaattttcttaacacacctgaagtaaggagttatctgcataacttgcatctccagcgcctccattcatgtgtagcacctttgctaa |
32705238 |
T |
|
| Q |
408 |
ttcca |
412 |
Q |
| |
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||||| |
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| T |
32705239 |
ttcca |
32705243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 454 - 671
Target Start/End: Original strand, 32705281 - 32705498
Alignment:
| Q |
454 |
ccggaatacatttgcttttatgcttatgcctttaaatatgttcatatattttcattgcaaaatttgccgcaagtgatccaatctggcgtgggtccttcga |
553 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32705281 |
ccggaatacatttgcttttatgcttatgcctttaaatatgttcatatattttcattgcaaaatttgccgcaagtgatccaatctggagtgggtccttcga |
32705380 |
T |
|
| Q |
554 |
aaaatttggtatataattagcaattaaagatccgtttaaatctcaatcaattcaaaaatannnnnnnnnnnnnnnnnnaaatttggtcaatggattgaaa |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32705381 |
aaaatttggtatataattagcaattaaagatccgtttaaatctcaatcaattcaaaaatatttttattttattttttaaaatttggtcaatggattgaaa |
32705480 |
T |
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| Q |
654 |
attgcgcatgtctcaata |
671 |
Q |
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|||||||||||||||||| |
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| T |
32705481 |
attgcgcatgtctcaata |
32705498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 15939611 - 15939445
Alignment:
| Q |
21 |
atgttatggaaaataacaaatgaataatagtctcattctcatagatggaaatgtgagatacatcaaatatttatagacaaatatagaaaattacacttaa |
120 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||| | |||||| ||| |
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| T |
15939611 |
atgttatggaaagtaagaaatgaataatagtctcattctcatagatggaaatgtgagttagatcaagtatttatagacaa--ctagtatattacaattag |
15939514 |
T |
|
| Q |
121 |
cctaattacatgctaatatgagagtttagactaaatgcaactaagtagcttgtatctcaagtaagctag |
189 |
Q |
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|||||||||| |||||||| ||| || | ||| || ||||| ||||||||||||||||||| |||| |
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| T |
15939513 |
cctaattacacactaatatgggagagtatagtaagtgtaactagctagcttgtatctcaagtaaactag |
15939445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 12054694 - 12054617
Alignment:
| Q |
110 |
attacacttaacctaattacatgctaatatgagagtttagactaaatgcaactaagtagcttgtatctcaagtaagct |
187 |
Q |
| |
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||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12054694 |
attacacttaaattaattacatgctaatattgaagattagactaaatgtaactaagtagcttgtatctcaagtaagct |
12054617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 20629265 - 20629342
Alignment:
| Q |
110 |
attacacttaacctaattacatgctaatatgagagtttagactaaatgcaactaagtagcttgtatctcaagtaagct |
187 |
Q |
| |
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||||||||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20629265 |
attacacttaaaaaaattacatgctaatattgaagattagactaaatgtaactaagtagcttgtatctcaagtaagct |
20629342 |
T |
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