View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4724-Insertion-6 (Length: 452)

Name: NF4724-Insertion-6
Description: NF4724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4724-Insertion-6
NF4724-Insertion-6
[»] chr4 (9 HSPs)
chr4 (80-452)||(33735619-33735991)
chr4 (80-452)||(33718946-33719321)
chr4 (91-285)||(33720976-33721170)
chr4 (80-285)||(33750419-33750624)
chr4 (332-452)||(33750683-33750803)
chr4 (347-452)||(33721214-33721325)
chr4 (8-54)||(33720884-33720930)
chr4 (8-54)||(33735547-33735593)
chr4 (8-54)||(33718880-33718926)
[»] chr3 (1 HSPs)
chr3 (97-146)||(45013999-45014048)
[»] chr7 (2 HSPs)
chr7 (97-149)||(6568891-6568943)
chr7 (97-149)||(6583050-6583102)
[»] chr1 (2 HSPs)
chr1 (112-144)||(50102277-50102309)
chr1 (111-144)||(47424881-47424914)
[»] chr8 (2 HSPs)
chr8 (111-146)||(8584915-8584950)
chr8 (94-140)||(38653235-38653281)
[»] chr5 (1 HSPs)
chr5 (87-140)||(2361316-2361369)
[»] chr2 (2 HSPs)
chr2 (94-134)||(13770959-13770999)
chr2 (115-215)||(45437332-45437432)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 80 - 452
Target Start/End: Original strand, 33735619 - 33735991
Alignment:
Q  80 gagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735619 gagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaac 33735718  T
Q  180 ctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735719 ctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcg 33735818  T
Q  280 cttaagaacgtggtggatccagaagtggctgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttg 379  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735819 cttaagaacgtggtggatccagaagtggttgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttg 33735918  T
Q  380 agagtaataagaattgtgatttttgggatagtatcagagaagctgattttcaacaactaatgaggtttatgga 452  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33735919 agagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatgga 33735991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 80 - 452
Target Start/End: Original strand, 33718946 - 33719321
Alignment:
Q  80 gagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaac 179  Q
    ||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  33718946 gagctaaaaagaagtatagaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaac 33719045  T
Q  180 ctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcg 279  Q
    ||||||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||||||||||| | |||||||||||     
T  33719046 ctttaccacggcggaggaagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcc 33719145  T
Q  280 cttaagaacgtggtggatccagaagtggctgtccctttggaggat---ataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggat 376  Q
    |||||| | || | ||| |||||||||   || | ||   || ||   | |||||| |||||||||||||||||||| |||||||| ||||  | ||| |    
T  33719146 cttaagcatgttgaggaaccagaagtgatcgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggt 33719245  T
Q  377 ttgagagtaataagaattgtgatttttgggatagtatcagagaagctgattttcaacaactaatgaggtttatgga 452  Q
    |||||| ||||||| |||||||||||| |||||| ||  | ||| |||||||||||||| | |||| |||||||||    
T  33719246 ttgagaataataaggattgtgattttttggatagcattggtgaacctgattttcaacaatttatgaagtttatgga 33719321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 91 - 285
Target Start/End: Original strand, 33720976 - 33721170
Alignment:
Q  91 aagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacgg 190  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  33720976 aagtacagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacgg 33721075  T
Q  191 cggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag 285  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||||||| | ||||||||||| ||||||    
T  33721076 cggaggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaag 33721170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 33750419 - 33750624
Alignment:
Q  80 gagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaac 179  Q
    |||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||| ||||||||   |||||||||||| |||||    
T  33750419 gagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaac 33750518  T
Q  180 ctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcg 279  Q
     ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| ||     
T  33750519 attttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattca 33750618  T
Q  280 cttaag 285  Q
    ||||||    
T  33750619 cttaag 33750624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 33750683 - 33750803
Alignment:
Q  332 acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcagagaagctgattttca 431  Q
    |||||||||||||||||||||| |||| |||||||| ||| ||||||| || ||||| | |||||||||||||||||||  |  | ||| ||||||||||    
T  33750683 acgagaatatgaatcaagaaatgcaaagtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttca 33750782  T
Q  432 acaactaatgaggtttatgga 452  Q
    |||||| ||||||||||||||    
T  33750783 acaactgatgaggtttatgga 33750803  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 452
Target Start/End: Original strand, 33721214 - 33721325
Alignment:
Q  347 aagaaatacaaattgagacaactatgggatttgagagtaataaga---attgtgatttttgggatagtatcag---agaagctgattttcaacaactaat 440  Q
    ||||||| |||||||||||||| |||||||||| || ||||| ||   | ||||||||||||||||||||  |   ||||||||||||||||||||| ||    
T  33721214 aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat 33721313  T
Q  441 gaggtttatgga 452  Q
    ||||||||||||    
T  33721314 gaggtttatgga 33721325  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 33720884 - 33720930
Alignment:
Q  8 aatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33720884 aatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 33720930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 33735547 - 33735593
Alignment:
Q  8 aatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33735547 aatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 33735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 33718880 - 33718926
Alignment:
Q  8 aatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 54  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  33718880 aatgcaacatagcaggatgtttaggatgcaatttcttctctcaagag 33718926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 45014048 - 45013999
Alignment:
Q  97 agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtga 146  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  45014048 agaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtga 45013999  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
Q  97 agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccc 149  Q
    ||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||    
T  6568891 agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc 6568943  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
Q  97 agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccc 149  Q
    ||||||||||| || || ||||||||||||||||| ||||| || ||||||||    
T  6583050 agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc 6583102  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 50102309 - 50102277
Alignment:
Q  112 aggccatggggaaaatgggctgctgagattcgt 144  Q
    |||||||||||||||||||||||||||||||||    
T  50102309 aggccatggggaaaatgggctgctgagattcgt 50102277  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 47424881 - 47424914
Alignment:
Q  111 gaggccatggggaaaatgggctgctgagattcgt 144  Q
    |||||||||||||| |||||||||||||||||||    
T  47424881 gaggccatggggaagatgggctgctgagattcgt 47424914  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 8584915 - 8584950
Alignment:
Q  111 gaggccatggggaaaatgggctgctgagattcgtga 146  Q
    |||||||||||| |||||||||||||||||||||||    
T  8584915 gaggccatggggcaaatgggctgctgagattcgtga 8584950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 38653281 - 38653235
Alignment:
Q  94 tacagaggagtgaggcagaggccatggggaaaatgggctgctgagat 140  Q
    ||||||||||| || ||||||||||||||||||||||| || |||||    
T  38653281 tacagaggagtaagacagaggccatggggaaaatgggcagcagagat 38653235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 2361369 - 2361316
Alignment:
Q  87 gaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagat 140  Q
    |||||| ||| | |||||||||||||| ||||||||||||||||| || |||||    
T  2361369 gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagat 2361316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 13770999 - 13770959
Alignment:
Q  94 tacagaggagtgaggcagaggccatggggaaaatgggctgc 134  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  13770999 tacagaggaatcaggcagaggccatggggcaaatgggctgc 13770959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 45437332 - 45437432
Alignment:
Q  115 ccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagagcttacg 214  Q
    ||||||||||||||||| |||||||| |||||||| |||   |  || ||||||||||| ||||| || | ||| || || |||||||| ||||| ||||    
T  45437332 ccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagcctacg 45437431  T
Q  215 a 215  Q
    |    
T  45437432 a 45437432  T

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